Bioinformatics is a disorganised disaster and I am too. So I made a shell.
This is a shell-wrapper to minimize the effort needed to collect command line provenance.
This post covers a lot of ground to describe practical and human requirements.
12 Matching Annotations
- Nov 2016
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samnicholls.net samnicholls.net
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- Sep 2016
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www.pachyderm.io www.pachyderm.io
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A Containerized Data Lake
A data container + workflow spec
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- Aug 2016
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lists.debian.org lists.debian.org
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Thorough review of available (cloud, VM, live) image building tools for Debian. Additional ones (e.g. packer, openstack-debian-images, diskimage-builder) are mentioned in the follow up emails
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bitbucket.org bitbucket.org
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TACC Scientific Apps -- Docker containers to be used on HPC
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- Jul 2016
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matthew-brett.github.io matthew-brett.github.io
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dat-data.com dat-data.comdat1
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The Dat Project
A peer-to-peer data distribution service
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- Jun 2016
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cds.nyu.edu cds.nyu.edu
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ReproZip
a python framework for packaging experiments for publication
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rr-project.org rr-project.org
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rr
record and replay application
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mybinder.org mybinder.orgbinder1
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FOSS service binding together Jupyter and Kubernetes (to manage docker images) to provide executable Jupyter notebooks.
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prakhar.me prakhar.me
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singularity.lbl.gov singularity.lbl.gov
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An alternative to docker that Chris says is better for cluster and is designed for reproducibility
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- May 2016
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xpra.org xpra.org
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