9 Matching Annotations
  1. Oct 2026
    1. A second mutation

      Case7: Female, 8 yrs onset

      CasePresentingHPOs: HP:0006785, HP:0003236, HP:0040083, HP:0003701, HP:0003323, HP:0008981, HP:0003458, HP:0030951 (Limb-girdle muscular dystrophy, Elevated serum creatine kinase, Toe walking, Proximal muscle weakness, Progressive muscle weakness, Calf muscle hypertrophy, EMG: myopathic abnormalities, Skeletal muscle fibrosis)

      HPOsFreeText: N/A

      CaseNotHPOs: HP:0100543 (Cognitive impairment)

      NotHPOsFreeText: N/A

      CaseAddInfo: Proband is homozygous for this deletion, Mother is confirmed heterozygous

      CasePreviousTesting: Peak CPK at 17,000 IU/l, Partially absent α- and β-sarcoglycan staining, Normal dystrophin content, Totally absent γ-sarcoglycan staining

      CaseGenotypingMethod: Total mRNA was isolated from muscle biopsies and cDNA was synthesized from it via reverse transcriptase. PCR and SSCP analysis was performed and excised, amplified, and sequenced. After finding the mutations, DNA from peripheral blood leukocytes or muscle biposies was isolated, PCR amplified, and sequenced to confirm the results.

      Variant: SGCG, 2-BP DEL, 793TG

      ClinVar: 2007 https://www.ncbi.nlm.nih.gov/clinvar/variation/2007/

      Also Reported As

      Variant: NM_000231.2(SGCG):c.794_795GT[3] (p.Cys267fs)

      ClinVar: 552513 https://www.ncbi.nlm.nih.gov/clinvar/variation/552513/

      gnomAD: 0.00009923, https://gnomad.broadinstitute.org/variant/13-23898596-CTG-C

    2. A fourth mutation

      Case19: Male, 4 yrs onset

      CasePresentingHPOs: HP:0006785, HP:0003236, HP:0003458, HP:0008981, HP:0031322, HP:0032019, HP:0003701 (Limb-girdle muscular dystrophy, Elevated serum creatine kinase, EMG: myopathic abnormalities, Calf muscle hypertrophy, Myocardial lymphocytic infiltration, Muscle eosinophilia, Proximal muscle weakness)

      HPOsFreeText: N/A

      CaseNotHPOs: HP:0100543 (Cognitive impairment)

      NotHPOsFreeText: N/A

      CaseAddInfo: Proband is homozygous for this deletion, Parents are confirmed heterozygous and consangeuinous

      CasePreviousTesting: Peak CPK at 25,000 IU/l, Partially absent α- and β-sarcoglycan staining, Normal dystrophin content, Totally absent γ-sarcoglycan staining

      CaseGenotypingMethod: Total mRNA was isolated from muscle biopsies and cDNA was synthesized from it via reverse transcriptase. PCR and SSCP analysis was performed and excised, amplified, and sequenced. After finding the mutations, DNA from peripheral blood leukocytes or muscle biposies was isolated, PCR amplified, and sequenced to confirm the results.

      ClinVar: 2004 https://www.ncbi.nlm.nih.gov/clinvar/variation/2004/

      Also Reported As

      Variant: NM_000231.2(SGCG):c.525del (p.Phe175fs)

      ClinVar: 189243 https://www.ncbi.nlm.nih.gov/clinvar/variation/189243/

      gnomAD: 0.00009671, https://gnomad.broadinstitute.org/variant/13-23869568-CT-C

    3. One mutation

      Case44: Female, 7 yrs onset

      CasePresentingHPOs: HP:0006785, HP:0003236, HP:0040083, HP:0003307, HP:0002527, HP:0003701, HP:0003323, HP:0009042, HP:0003458, HP:0100305, HP:0031542 (Limb-girdle muscular dystrophy, Elevated serum creatine kinase, Toe walking, Hyperlordosis, Falls, Proximal muscle weakness, Progressive muscle weakness, Marked muscular hypertrophy, EMG: myopathic abnormalities, Ring fibers, Myelin-like whorls in vacuolated fibers)

      HPOsFreeText: Wheelchair at 14 yrs

      CaseNotHPOs: HP:0003115, HP:0100543 (Abnormal EKG, Cognitive impairment)

      NotHPOsFreeText: N/A

      CaseAddInfo: Proband is homozygous for this duplication, Parents are confirmed heterozygous

      CasePreviousTesting: Peak CPK at 20,000 IU/l, Partially absent α- and β-sarcoglycan staining, Normal dystrophin content, Totally absent γ-sarcoglycan staining

      CaseGenotypingMethod: Total mRNA was isolated from muscle biopsies and cDNA was synthesized from it via reverse transcriptase. PCR and SSCP analysis was performed and excised, amplified, and sequenced. After finding the mutations, DNA from peripheral blood leukocytes or muscle biposies was isolated, PCR amplified, and sequenced to confirm the results.

      Variant: NM_000231.2(SGCG):c.87dup (p.Gly30fs)

      ClinVar: 2008 https://www.ncbi.nlm.nih.gov/clinvar/variation/2008/

      gnomAD: 0.000008805, https://gnomad.broadinstitute.org/variant/13-23777919-A-AT

    1. RESULTS

      NonHumanModel: Mouse (Mus musculus)

      GeneAlteration: CRISPR-Cas9 gene editing was used to produce gene-edited mouse zygotes. This was accomplished by designing a guide RNA (gRNA) with the CRISPR design tool and microinjecting the gRNA complex along with Cas9 mRNA and a ultramer repair template including the single deletion into mouse zygotes. This directs double-strand breaks in the genome with homology directed repair causing the precise genome edit necessary. These were injected into psuedo-pregnant C57BL/6J mice. After birth, tail DNA was genotyped via PCR and Sanger seuqencing to confirm the mutation. One heterozygous 525delT mouse was crossed and the offspring backcrossed onto DBA/2J background until the F5 generation confirmed homozygous for the severe LTBP4 allele which results in a more severe disease progression. RT-PCR confirmed the presence of the deletion and loss of γ-sarcoglycan was confirmed via immunoblot analysis and immunofluorescence microscopy.

      ModelPhenotype: HP:0003202, HP:0031237, HP:0030951, HP:0003713, HP:0011987, HP:0003557, HP:0003236, HP:0003323, HP:0005957 (Skeletal muscle atrophy, Internally nucleated skeletal muscle fibers, Skeletal muscle fibrosis, Muscle fiber necrosis, Ectopic ossification in muscle tissue, Increased variability in muscle fiber diameter, Progressive muscle weakness, Breathing dysregulation)

      ModelFreeText: Decreased cross-sectional area of myofibers, Increased immune infiltrate, Increased dye uptake into compromised myofibers

      HumanPhenotype: HP:0003202, HP:0030951, HP:0003713, HP:0003236, HP:0003323, HP:0005957 (Skeletal muscle atrophy, Skeletal muscle fibrosis, Muscle fiber necrosis, Elevated serum creatine kinase, Progressive muscle weakness, Breathing dysregulation)

      HumanFreeText: N/A

      ModelEvidence: This model has many positive aspects compared to the default mouse model, although it also has some challenges to overcome. In terms of the generation, CRISPR-Cas9 gene editing via HDR is a relatively simple way to modify the genome as needed and create only the variant of interest while leaving the rest untouched. This results in a knock-in with a reasonable assurance that whatever phenotypes are displayed stem solely from the change in the SGCG gene. Specifically the muscle atrophy, elevated serum creatine kinase, progressive weakness (half the strength of controls at 4 months), and signifiacntly increased muscle fibrosis/necrosis are all hallmarks of the human LGMD presentation and are recapitulated here. However, the presence of a known muscular dystrophy-modifying background raises the question of whether some of these phenotypes would not be seen in a mouse with the C57BL/6J background. Unfortunately this is not answered in the paper, so it introduces some doubt as to the total validity of the results.

      ModelVariant: NM_000231.2(SGCG):c.525del (p.Phe175fs)

      ClinVar: 189243 https://www.ncbi.nlm.nih.gov/clinvar/variation/189243/

    1. 1118

      Case1118: 11 yrs onset, United States, Hispanic

      CasePresentingHPOs: HP:0006785, HP:0003236, HP:0001644, HP:0002540 (Limb-girdle muscular dystrophy, Elevated serum creatine kinase, Dilated cardiomyopathy, Inability to walk)

      HPOsFreeText: N/A

      CaseNotHPOs: N/A

      NotHPOsFreeText: N/A

      CaseAddInfo: Parental testing not performed

      CasePreviousTesting: Serum CK levels 3,000 - 4,000 UI/l; Genetic testing also included DSG

      CaseGenotypingMethod: DNA was collected from peripheral blood or saliva samples. WES was performed and processed though a pipeline before aligning the reads and analyzing the candidate gene list for any variants using the various inheritance patterns. Screening was performed based on in silico predictors with a liberal threshold to filter variants before PCR amplification and Sanger sequencing confirmed the pathogenic mutations.

      Variant: NM_000231.2(SGCG):c.787G>A (p.Glu263Lys)

      ClinVar: 2009 https://www.ncbi.nlm.nih.gov/clinvar/variation/2009/

      gnomAD: 0.00006193, https://gnomad.broadinstitute.org/variant/13-23898591-G-A

      Note: Variant-level evidence found in PMID: 16832103. Immunohistochemistry showed absent γ-sarcoglycan in this proband.

    2. 1049

      Case1049: 5 yrs onset, United States, Black

      CasePresentingHPOs: HP:0006785, HP:0003236 (Limb-girdle muscular dystrophy, Elevated serum creatine kinase)

      HPOsFreeText: N/A

      CaseNotHPOs: N/A

      NotHPOsFreeText: N/A

      CaseAddInfo: Affected brother, sister, and half-brother, Genotype confirmed in proband and affected brother only

      CasePreviousTesting: Serum CK levels 8,000 - 18,000 UI/l; Genetic testing also included DMD, FKRP, DM1, DM2;

      CaseGenotypingMethod: DNA was collected from peripheral blood or saliva samples. WES was performed and processed though a pipeline before aligning the reads and analyzing the candidate gene list for any variants using the various inheritance patterns. Screening was performed based on in silico predictors with a liberal threshold to filter variants before PCR amplification and Sanger sequencing confirmed the pathogenic mutations.

      Variant1: NM_000231.2(SGCG):c.195+4_195+7del

      ClinVar: 208611 https://www.ncbi.nlm.nih.gov/clinvar/variation/208611/

      gnomAD: 0.00004009, https://gnomad.broadinstitute.org/variant/13-23778027-CAGTA-C

      Variant2: NM_000231.2(SGCG):c.195+1G>C

      ClinVar: 283707 https://www.ncbi.nlm.nih.gov/clinvar/variation/283707/

      gnomAD: 0.0002004, https://gnomad.broadinstitute.org/variant/13-23778029-G-C

    1. an affected Tunisian SCARMD patien

      Case1: Male, Tunisia

      CasePresentingHPOs: N/A

      HPOsFreeText: N/A

      CaseNotHPOs: N/A

      NotHPOsFreeText: N/A

      CaseAddInfo: Proband is homozygous for this variant, Family is consanguinous, Immunostaining of the patient's muscle showed deficiency of all three sarcoglycan subunits, Variant was found in an affected sibling and in both other families in PMID:1303286

      CasePreviousTesting: N/A

      CaseGenotypingMethod: Rabbit and human y-sarcoglycan were identifed and genomic phages were found to hybridize to the same region implicated in linkage analysis for ARLGMD. RNA from a skeletal muscle biopsy was taken and the PCR products were directly sequenced revealing a homozygous deletion that was confirmed in the DNA via PCR amplification and sequencing.

      PreviouslyPublished: PMID:1303286

      Variant: SGCG, 1-BP DEL, 525T

      ClinVar: 2004 https://www.ncbi.nlm.nih.gov/clinvar/variation/2004/

      Also Reported As

      Variant: NM_000231.2(SGCG):c.525del (p.Phe175fs)

      ClinVar: 189243 https://www.ncbi.nlm.nih.gov/clinvar/variation/189243/

      gnomAD: 0.00009671, https://gnomad.broadinstitute.org/variant/13-23869568-CT-C

    1. Apoptosis assay

      PatientCell: CL:0000187 (Muscle Cell)

      GeneFunction: Muscle Cell Apoptotic Process (GO:0010657)

      GeneAlteration: Samples were collected from deltoid muscle biopsy of control individuals and LGMD2C individuals with the 525delT founder mutation. No further alteration necessary.

      FunctionalEvidence: TUNEL staining was perfomed on muscle samples from LGMD2C patients and healthy controls to test for cell apoptosis. No positive staining was detected in any control individuals while it was commonly found in the patient muscle. This indicates that a result of SGCG disruption is increased cellular apoptosis likely contributing to the myofiber degeration and muscle atrophy seen commonly in LGMD patients.

      FAVariant: NM_000231.2(SGCG):c.525del (p.Phe175fs)

      ClinVarID: 189243 https://www.ncbi.nlm.nih.gov/clinvar/variation/189243/

    1. two unrelated patients

      CaseRoma: France

      CasePresentingHPOs: HP:0006785, HP:0003236, (Limb-girdle muscular dystrophy, Elevated serum creatine kinase)

      HPOsFreeText: Wheelchair bound before 14 yrs

      CaseNotHPOs: N/A

      NotHPOsFreeText: N/A

      CaseAddInfo: Probands are from consanguineous gypsy families supporting a founder event, This mutation segregated with the disease in 18 patients and all asymptomatic parents were heterozygous, 15 siblings were heterozygous and asymptomatic except for a moderate increase in Serum CK in some

      CasePreviousTesting: Duchenne-like clinical presentation, Males and females equally affected, Normal dystrophin and decreased level of α- and γ-SG in muscle specimens

      CaseGenotypingMethod: DNA was isolated from peripheral blood leukocytes and subject to PCR amplification for linkage analysis. Total RNA was extracted from muscle biopsies and cDNA synthesis was performed and amplified. This was sequenced and analyzed for mutations.

      Variant: NM_000231.2(SGCG):c.848G>A (p.Cys283Tyr)

      ClinVar: 2006 https://www.ncbi.nlm.nih.gov/clinvar/variation/2006/

      gnomAD: 0.000008796, https://gnomad.broadinstitute.org/variant/13-23898652-G-A

      Affected: 18

      Unaffected: At least 29

      Segregations: N/A

      SegregationAddInfo: Candidate Gene Sequencing