- Nov 2022
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www.biorxiv.org www.biorxiv.org
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We introduce the use of a specific suite of parameters and protocols that greatly improves the agreement among pipelines developed by diverse organizations.
From reading the paper it seems like this was done on samples where the SARS-COV-2 in the sample is likely to be genetically uniform. Have you done this at all on samples such as those from wastewater or sewage or environmental swabs where there are likely to be many different variants within a single sample?
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- Jun 2020
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www.nature.com www.nature.com
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Hiatt, J., Patwardhan, R., Turner, E. et al. Parallel, tag-directed assembly of locally derived short sequence reads. Nat Methods 7, 119–122 (2010). https://doi.org/10.1038/nmeth.1416
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academic.oup.com academic.oup.com
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pig gut
Pig gut dataset in GigaDB http://dx.doi.org/10.5524/100187
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- May 2020
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academic.oup.com academic.oup.com
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availability of gene reference catalogs from gut microbiomes
Like this data many hosted in our GigaDB repository, and this has been covered in more detail in GigaBlog http://gigasciencejournal.com/blog/monkey-microbiome/
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- Feb 2020
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academic.oup.com academic.oup.com
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Ocean Sampling Day
One of the authors has presented a talk on the Citizen Science offshoot of this project here https://youtu.be/t6WpLbd0Nf8
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- Apr 2016
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gigadb.org gigadb.org
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Workflow, Virtual-Machine
The dockerised workflows are discussed in more detail in this blog posting here: http://blogs.biomedcentral.com/gigablog/2015/07/30/fermenting-reproducible-research-revolution/
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