52 Matching Annotations
  1. Aug 2016
    1. The omnibus test statistic, Pillai’s Trace, indicated the presence of a significant group difference among the log lobe volumes (F = 2.886, df = 4,37; p = 0.040).

      ID: 001
      Value: log lobe vol
      Variable: diagnosis
      ModelID: Pillai's Trace
      F: 2.886
      DF: 4, 37
      P: 0.040

    1. Cerebellar white matter was significantly larger in the ALI group (28.2 cc) than in the SLI group (25.1 cc), F(3,38) = 3.0, p = 0.04, contrast t(38) = 2.96, p < 0.005.

      ID: 002
      Variable: cerebellar WM vol
      Group: ALI
      Cerebellar WM Vol: 28.2
      Units: cc

      ID: 003 Variable: cerebellar WM vol Group: SLI Cerebellar WM Vol: 25.1 Units: cc

      ID: 004 Variable: cerebellar WM vol, diagnosis Group: ALI, SLI F: 3.0 DF: 3, 38 P: 0.04 ContrastDF: 38 ContrastT: 2.96 ContrastP: <0.005

      *Break into test of all groups, then contrast is ALI SLI

    2. Whole cerebellum and cerebellar cortex volumes did not differ among the four subject groups

      ID: 001
      Variable: whole cerebellum volume, cerebellar cortex volume, diagnosis
      Interpretation: Whole cerebellum volume and cerebellar cortex volume did not vary across diagnostic groups NC, ALN, ALI, SLI

  2. Jul 2016
    1. Cortical analyses vertexwise across the surface were performed with general linear models to investigate relations of birth weight to regional cortical area and thickness, controlling for variation in age, sex, household income, and GAF as well as scanner used. When a commonly used approach to correct for multiple comparisons was used [false discovery rate (FDR) < 5%], minute effects of birth weight were observed on cortical thickness. However, significant positive relationships between birth weight and area were observed across large parts of the cortical surface (Fig. 1). On the medial surface of the brain, effects were seen bilaterally in the rostral anterior cingulate, retrosplenial, paracentral, precuneus, superior frontal and medial orbitofrontal cortices, parahippocampal, and fusiform gyri. On the lateral brain surface, bilateral effects extended from parsorbitalis to cover parts of lateral orbitofrontal cortices, and there were also effects in the rostral middle frontal, inferior parietal, and superior and middle temporal cortices as well as in the pre- and postcentral gyri. A few somewhat more scattered unilateral effects were also seen. Medially, effects extended into the caudal anterior cingulate in the left but not right hemisphere, whereas superior and orbitofrontal effects were more pronounced in the right than left hemisphere. Lateral effects were also more pronounced in the left orbitofrontal cortex, but otherwise, lateral effects also seemed slightly more extensive in the right hemisphere, covering somewhat larger temporal and parietal areas. Because the use of FDR for correction for multiple comparisons may influence the detection of specific effect sites, the full range of effects uncorrected at P < 0.05 is also shown in Fig. S1. Uncorrected, effects were somewhat more extensive, but the general pattern described was similar. A scatter plot of the relationship between birth weight and anterior cingulate area (partial β = 0.19, P < 0.0001) is shown in Fig. 2A. It appears from the plot that the low birth weight cases were not disproportionately influencing the relationship and that the relationship between cortical area and birth weight was also monotonous. The relationship between birth weight and anterior cingulate area remained virtually identical when excluding the low birth weight (1,500–2,499 g) cases (partial β = 0.18, P < 0.0001).

      Vague result info- currently beyond scope

    2. No significant effects were observed for the striatal volumes, with only a marginal effect observed for putamen (P = 0.062) when congruent reaction time was included as covariate.

      ID: 020
      Variable: Flanker performance, striatal vol
      Interpretation: no relationship found

      ID: 021 Variable: Flanker performance, putamen vol Model: ? (includes congruent RT) P: 0.062 Interpretation: slight cognitive control effect observed for putamen volume

    3. There were no significant effects of birth weight on Flanker performance

      ID: 019
      Variable: incongruent condition Flanker performance, birth weight
      Interpretation: no relationship found

    4. Birth weight was positively related to total anterior cingulate area in this subsample (partial β = 0.14, P < 0.001, df = 20, 502).

      ID: 018
      Variable: birth weight, total anterior cingulate area
      PartialBeta: 0.14
      P: <0.001
      DF: 20, 502

    5. no relationship was observed in the congruent condition

      ID: 017
      Variable: incongruent condition Flanker performance, total anterior cingulate area
      Interpretation: no relationship found

    6. alid Flanker data were available for 522 participants, and we used reaction time in the incongruent condition, related to cognitive control, as the measure of interest. With GAF, MR site, sex, socioeconomic status, and age as covariates, better Flanker performance was significantly related to larger total anterior cingulate area [partial β = −0.092, P = 0.011, degrees of freedom (df) = 20, 502]. This effect was specific to cognitive control, because the relationship survived adding congruent reaction time as an additional covariate area (partial β = −0.064, P = 0.006, df = 21, 501);

      ID: 015
      Variable: Flanker performance, total anterior cingulate area
      Model:
      PartialBeta: -0.092
      P: 0.011
      DF: 20, 502

      ID: 016 Variable: Flanker performance, total anterior cingulate area Model: ? (includes congruent RT) PartialBeta: -0.064 P: 0.006 DF: 21, 501

    7. Although there did seem to be somewhat stronger effects of birth weight on pallidum and caudate volumes within the low birth weight group, none of the differences among effects in this group and the others reached significance (P > 0.10).

      ID: 013
      Variable: birth weight, pallidum vol
      Group: low birth rate
      Low Birth Weight: 1500-2499 g
      P: >0.10
      Interpretation: birth weight effects observed on pallidum volume

      ID: 014 Variable: birth weight, caudate vol Group: low birth rate Low Birth Weight: 1500-2499 g P: >0.10 Interpretation: birth weight effects observed on caudate volume

    8. palladium,

      Typo?

    9. For selected ROIs showing a significant relationship to birth weight, putamen, palladium, caudate, TBV, and rostral anterior cingulate cortex area, regression analyses were also repeated, including (i) a quadratic birth weight term to investigate possible differential effects in select ranges of birth weight and (ii) an interaction term of birth weight and age to investigate possible differential effects of birth weight at different ages. In no case did the quadratic term or the interaction term exert a significant effect (P > 0.10).

      Vague result. Description of regression model

    10. an effect of method of delivery on rostral anterior cingulate area, where larger area was observed with cesarean section (standardized β = 0.09, P = 0.018). This finding did not, however, attenuate the relationship with birth weight, for which the effect size remained virtually identical (standardized β = 0.185 vs. 0.193, both P values < 0.0001) when method of delivery was included or not included in the analysis, respectively.

      ID: 010
      Variable: rostral anterior cingulate area, birth method
      Group: c section
      ModelID: ?
      StandardizedBeta: 0.09
      P: 0.018

      ID: 011 Variable: birth weight, birth method Group: c section ModelID: ? StandardizesBeta: 0.193 P: <0.0001

      ID: 012 Variable: birth weight, birth method Group: vaginal birth ModelID: ? StandardizesBeta: 0.185 P: <0.0001

      *Assumption made about which beta corresponds to which birth method

    11. a unique relationship between birth weight and caudate volume remained (partial β = 0.11, P = 0.002)

      ID: 009
      Variable: birth weight, caudate vol
      Model: ? (include TBV as regressor)
      PartialBeta: 0.11
      P: 0.002

    12. These relationships also remained largely similar when excluding the low (1,500–2,499 g) birth weight cases (partial β for putamen: 0.09, P = 0.022; pallidum: 0.11, P = 0.004; caudate: 0.19, P < 0.001; TBV: 0.17, P < 0.001)

      ID: 005
      Variable: birth weight, putamen vol
      Group: birth weight >2499g
      PartialBeta: 0.09
      P: 0.022
      Interpretation: birth weight positively associated with putamen volume

      ID: 006 Variable: birth weight, pallidum vol Group: birth weight >2499g PartialBeta: 0.11 P: 0.004 Interpretation: birth weight positively associated with pallidum volume

      ID: 007 Variable: birth weight, caudate vol Group: birth weight >2499g PartialBeta: 0.19 P: <0.001

      ID: 008 Variable: birth weight, TBV vol Group: birth weight >2499g PartialBeta: 0.17 P: <0.001 Interpretation: birth weight positively associated with TBV vol

    13. Birth weight was uniquely and positively associated with each volume (partial β for putamen: 0.11, P = 0.006; pallidum: 0.12, P = 0.002; caudate: 0.20, P < 0.001; TBV: 0.16, P < 0.001)

      ID: 001
      Variable: birth weight, putamen vol
      PartialBeta: 0.11
      P: 0.006
      Interpretation: birth weight positively associated with putamen volume

      ID: 002 Variable: birth weight, pallidum vol PartialBeta: 0.12 P: 0.002 Interpretation: birth weight positively associated with pallidum volume

      ID: 003 Variable: birth weight, caudate vol PartialBeta: 0.20 P: <0.001

      ID: 004 Variable: birth weight, TBV vol PartialBeta: 0.16 P: <0.001 Interpretation: birth weight positively associated with TBV vol

    1. No associations were found between the lobes or individual PUs and the following clinical variables: antipsychotic dose in chlorpromazine equivalents, YMRS score, duration of illness, presence or absence of ADHD, and current mood state (manic, mixed, depressed, or euthymic)

      ID: 015
      Variable: lobe vol, antipsychotic dos in chlorpromazine equivalents, YMRS score, duration of illness, ADHD, current mood state
      Interpretation: No associations were found between lobe volume and these clinical variables

      ID: 016 Variable: PU vol, antipsychotic dos in chlorpromazine equivalents, YMRS score, duration of illness, ADHD, current mood state Interpretation: No associations were found between PU volumes and these clinical variables

    2. When we looked at the gyri in the BPD group, we found only that volumes of the left log POG were significantly and positively associated with scores on the GAF (B = 0.012; t = 2.22, p = 0.035).

      ID: 014
      Variable: left POG vol, GAF score
      Group: BPD
      B: 0.012
      T: 2.22
      P: 0.035
      Interpretation: left POG vol positively associated with GAF score

    3. The left log PL volumes in the BPD children decreased significantly in association with increasing numbers of psychoactive medications (B = −0.04; t = −2.138, p = 0.042) (when we examined the possible relationship between type of medication and change in PL volumes, we did not detect any significant or trend relationship between type of medication and PL volume).

      ID: 012
      Variable: left PL vol, quantity of medications
      B: -0.04
      T: -2.138
      P: 0.042
      Interpretation: left PL vol decreased with increased number of psychoactive medications

      ID: 013 Variable: PL vol, type of medication Interpretation: no relationship observed between PL vol and type of medication

    4. Within the BPD group, those children with psychotic symptoms had smaller left log TL volumes (B = −0.092; t = −2.066, p = 0.048) than those without psychotic symptoms

      ID: 011
      Variable: left TL vol, diagnosis
      Group: BPD_psych
      B: -0.092
      T: -2.066
      P: 0.048

    5. No significant group differences were found in the right or left FL

      ID: 009
      Variable: FL vol
      Interpretation: no significant difference in FL vol observed

    6. We did find significant group differences in the right MFG (B = −0.144; t = −2.289, p = 0.027

      ID: 010
      Variable: right MFG vol
      Group: BPD
      B: -0.144
      T: -2.289
      P: 0.027

    7. The bipolar group had significantly smaller log left TL volumes compared with the control group (B = −0.050; t = −2.258, p = 0.029).

      ID: 008
      Variable: left TL vol
      Group: BPD
      B: -0.050
      T: -2.258
      P: 0.029

    8. the BPD had significant reductions in the right and left POG (right: B = −0.116; t = −2.027, p = 0.049; left: B = −0.136; t = −2.592, p = 0.013).

      ID: 006
      Variable: right POG vol
      Group: BPD
      B: -0.116
      T: -2.027
      P: 0.049

      ID: 007 Variable: left POG vol Group: BPD B: -0.136 T: -2.592 P: 0.013

    9. Interestingly, both age and Verbal IQ for all children in this study (both BPD and HC combined) showed inverse relationships with PL volume, such that children with higher Verbal IQ scores were more likely to have smaller PL volumes, and older children were more likely to have smaller PL volumes.

      ID: 004
      Interpretation: Observed inverse relationship between age and PL volume

      ID: 005 Interpretation: Observed inverse relationship between verbal IQ score and PL volume

    10. The bipolar youth had significantly smaller log right and left PL volumes relative to the HC (right: B = −0.080, t = −2.154, p = 0.037; left: B = −0.102; t = −3.122, p = 0.003), after controlling for the significant effects of age, Verbal IQ, and log cerebral volume (see Table 4 for summary of regression models).

      ID: 002
      Variable: right PL vol
      Group: BPD
      B: -0.080
      T: -2.154
      P: 0.037
      Interpretation: BPD youth had smaller right PL volumes than HC

      ID: 003 Variable: left PL vol Group: BPD B: -0.102 T: -3.122 P: 0.003 Interpretation: BPD youth had smaller left PL volumes than HC

    1. Image analysis was done on Sun Microsystems, Inc. (Mountainview, CA) workstations using Cardviews software (Caviness et al. 1996).

      ID: VolumeAnalysis Method: MethodURL: Software: Cardviews

  3. Mar 2016
    1. 19 with BPD I with psychosis (mean age = 11.6 ± 2.6 years),

      ID: BPwPsy Diagnosis: Bipolar Disorder I with Psychosis NSubjects: 19 AgeMean: 11.6 years AgeSD: 2.6 years

    2. Significant diagnostic differences were seen in the left and right cerebral volumes in interaction with sex (right: F3,93 = 2.9, P = .04; left: F3,93 = 3.1, P = .04). Post hoc comparisons showed that both bipolar groups (with and without psychosis) had significantly smaller left and right cerebral volumes than HCs; this difference was even more marked in the female BPD groups. The SZ group did not differ significantly from the other groups.

      ID: RLCerebrumVol Model: Model2 Observation: BPwPsyStructuralVolumes Observation: BPwoPsyStructuralVolumes Observation: HCStructuralVolumes Observation: SZStructuralVolumes Software: JMP for Mac

    3. Significant diagnostic differences were seen in the left and right cerebral volumes in interaction with sex (right: F3,93 = 2.9, P = .04; left: F3,93 = 3.1, P = .04). Post hoc comparisons showed that both bipolar groups (with and without psychosis) had significantly smaller left and right cerebral volumes than HCs; this difference was even more marked in the female BPD groups. The SZ group did not differ significantly from the other groups.

      ID: Model2 Variable: Diagnosis Variable: Sex Variable: Diagnosis+Sex Variable: Age Type: Linear model, ANCOVA, Tukey HSD

    4. structural acquisitions included a conventional T1-weighted sagittal scout series, a proton density/T2-weighted interleaved double-echo axial series, and a three-dimensional inversion recovery-prepped spoiled grass coronal series

      ID: Scout Type: Scout AcquisitionInstrument: McLeanScanner

      ID: T2 Type: PD/T2 AcquisitionInstrument: McLeanScanner

      ID: Anatomical Type: SPGR AcquisitionInstrument: McLeanScanner

    5. The regions of interest (ROIs) in this study consisted of the amygdala and hippocampus with all other subcortical structures included in an exploratory way

      ID: BPwPsyStructuralVolumes Measure: Brain structure volumes AnalysisWorkflow: VolumetricWorkflow Data: BPwPsyStructuralData

      ID: BPwoPsyStructuralVolumes Measure: Brain structure volumes AnalysisWorkflow: VolumetricWorkflow Data: BPwoPsyStructuralData

      ID: HCStructuralVolumes Measure: Brain structure volumes AnalysisWorkflow: VolumetricWorkflow Data: HCStructuralData

      ID: SZStructuralVolumes Measure: Brain structure volumes AnalysisWorkflow: VolumetricWorkflow Data: SZStructuralData

    6. Significant diagnostic differences were seen in the left and right cerebral volumes in interaction with sex (right: F3,93 = 2.9, P = .04; left: F3,93 = 3.1, P = .04).

      ID: LCerebralVolume ModelApplication: RLSubcBrainVolumes Value: Left Cerebral Volume Variable: Diagnosis+Sex F: 2.9 P: 0.04 Interpretation: Significant differences

      ID: RCerebralVolume ModelApplication: RLSubcBrainVolumes Value: Right Cerebral Volume Variable: Diagnosis+Sex F: 3.1 P: 0.04 Interpretation: Significant differences

    7. Differences in right and left subcortical brain volumes

      ID: RLSubcBrainVolumes Model: Model1 Observation: BPwPsyStructuralVolumes Observation: BPwoPsyStructuralVolumes Observation: HCStructuralVolumes Observation: SZStructuralVolumes

    8. In brief, structural scans were transferred to the Center for Morphometric Analysis-Charlestown Massachusetts General Hospital and coded and catalogued for blind analysis. Imaging analysis was done by 2 raters on Sun Microsystems, Inc (Mountainview, CA) workstations using Cardviews software.44 The datasets were positionally normalized to overcome variations in head position and then segmented into gray, white, and cerebrospinal fluid (CSF) tissue classes. The segmentation method uses a semiautomated intensity contour algorithm for external border definition and signal intensity histogram distributions for delineation of gray-white borders. Total cerebral volume (TCV) was defined as all tissue in the cerebrum, including CSF, and excluded cerebellum and brain stem

      ID: VolumetricWorkflow Method: CMA segmentation MethodURL: http://www.ncbi.nlm.nih.gov/pubmed/8921207 Software: Cardviews

    9. three-dimensional inversion recovery-prepped spoiled grass coronal series

      ID: BPwPsyStructuralData SubjectGroup: BPwPsy Acquisition: Anatomical DOI: 10.18116/C6159Z

      ID: BPwoPsyStructuralData SubjectGroup: BPwoPsy Acquisition: Anatomical DOI: 10.18116/C6159Z

      ID: HCStructuralData SubjectGroup: HC Acquisition: Anatomical DOI: 10.18116/C6159Z

      ID: SZStructuralData SubjectGroup: SZ Acquisition: Anatomical DOI: 10.18116/C6159Z

    10. 29 HCs (mean age = 10.5 ± 2.9 years).

      ID: HC Diagnosis: Healthy control NSubjects: 29 AgeMean: 10.5 years AgeSD: 2.9 years

    11. 20 with SZ or schizoaffective disorder (mean age = 13.5 ± 2.9 years),

      ID: SZ Diagnosis: Schizoaffective disorder NSubjects: 20 AgeMean: 13.5 years AgeSD: 2.9 years

    12. 35 youths with BPD I without psychosis (mean age = 10.4 ± 3.0 years),

      ID: BPwoPsy Diagnosis: Bipolar Disorder I without Psychosis NSubjects: 35 AgeMean: 10.4 years AgeSD: 3.0 years

    13. 2-way (diagnosis, sex) univariate analyses covarying for TCV and age

      ID: Model1 Variable: Diagnosis Variable: Sex Variable: Diagnosis+Sex Variable: TCV Variable: Age

    14. McLean Hospital Brain Imaging Center on a 1.5 Tesla General Electric Signa Scanner

      ID: McLeanScanner Type: MR Location: McLean Hospital Field: 1.5T Manufacturer: GE Model: Signa

    15. All statistical tests were 2 sided with alpha = .05. JMP 7 for Mac (SAS Institute, Cary, NC) was used for statistical analysis

      +ID: RLSubcBrainVolumes Software: JMP for Mac

    1. A series of Analyses of Variance (ANOVA) were performed on CC1 through CC7 and total CC as dependent variables with sex, age, and TCV as covariates to compare CC volumes and CC midsagittal areas between youths with BPD and HC to determine if there were group differences.

      ID: ANOVAvol Variable: CC1vol Variable: CC2vol Variable: CC3vol Variable: CC4vol Variable: CC5vol Variable: CC6vol Variable: CC7vol Variable: CCvol Variable: age Variable:sex Variable:TCV

      ID: ANOVAarea Variable: CC1area Variable: CC2area Variable: CC3area Variable: CC4area Variable: CC5area Variable: CC6area Variable: CC7area Variable: CCarea Variable: age Variable:sex Variable:TCV

    2. Equality of groups on demographic and clinical variables was evaluated by t-tests for continuous variables and chi-square tests for categorical variables

      ID: Ttest Variable:

      ID: chi-square Variable:

    3. Total cerebral volume (TCV) was defined as all gray and white matter in the cerebrum and did not include CSF, cerebellum or brainstem.

      ID: StructuralVolumes Measure: TCV AnalysisWorkflow: VolumeAnalysis Data:

    4. volumetric measures of the CC, we utilized a comprehensive white matter parcellation method to subdivide the cerebral WM into peripheral and deep divisions based upon a set of topographic relationships and geometric constraints related to cortical and subcortical structures as guided by known generalized white matter organizational principles (Makris et al. 1999; Meyer et al. 1999)
      ID: CCvolumes 
      Measure: CCvol, CC1vol, CC2vol, CC3vol, CC4vol, CC5vol, CC6vol, CC7vol 
      AnalysisWorkflow: VolumeAnalysis 
      Data:
      
    5. cross-sectional area measurements were obtained for total CC and the seven subregions based on the subdivisions described by Witelson

      ID: CCareas Measure: CCarea, CC1area, CC2area, CC3area, CC4area, CC5area, CC6area, CC7area AnalysisWorkflow: VolumeAnalysis Data:

    6. SPSS 15.0 for Windows (SPSS, Inc., Chicago, IL) was used for statistical analysis.
      ID: VolumeAnalysis
      URL:
      Software: SPSS 15.0 for Windows (SPSS, Inc., Chicago, IL)
      Observation: CCVolumes 
      Model: ANOVA 
      
    7. The acquisitions included a 3-D inversion recovery-prepped spoiled gradient recalled echo coronal series, which was used for structural analysis (124 slices, prep=300 msec, TE=1 min, flip angle=25°, FOV= 24 cm2, slice thickness 1.5 mm, acquisition matrix 256×192, number of excitations=2).

      ID: SPGR AcquisitionInstrument: MRIScanner Type: SPGR

    8. Structural imaging was performed at the McLean Hospital Brain Imaging Center on a 1.5 Tesla Scanner (Signa; GE Medical Systems, Milwaukee, WI).

      ID: MRIScanner Type: MRI Location: McLean Hospital Brain Imaging Center Field: 1.5 Tesla Manufacturer: General Electric Model: Signa