85 Matching Annotations
- Aug 2020
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sites.google.com sites.google.com
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- Mar 2020
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github.com github.com
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missing.csail.mit.edu missing.csail.mit.edu
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- Feb 2020
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github.com github.com
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poldrack/PythonForRUsers
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- Jan 2018
- Sep 2017
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www.stat.columbia.edu www.stat.columbia.edu
- Aug 2017
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github.com github.com
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- Jul 2017
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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- Jun 2017
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uoftcoders.github.io uoftcoders.github.io
- May 2017
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content.iospress.com content.iospress.com
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Cloudy, increasingly FAIR; revisiting the FAIR Data guiding principles for the European Open Science Cloud
This is a good article that gives some additional explanations of FAIR.
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- Feb 2017
- Jan 2017
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www.datacarpentry.org www.datacarpentry.org
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www.bigdatau.org www.bigdatau.org
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callingbullshit.org callingbullshit.org
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- Dec 2016
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www.secretgeek.net www.secretgeek.net
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- Nov 2016
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guides.github.com guides.github.com
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What is GitHub?
Some pretty useful training material here.
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stepik.org stepik.org
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We are open for knowledge
just came across this platform. It's used in PyCharm to provide Python tutorial functionality.
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www.w3.org www.w3.org
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Data on the Web Best Practices
A description for different qualities and targets for data sharing or publishing.
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www.scientificpaperofthefuture.org www.scientificpaperofthefuture.org
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www.software.ac.uk www.software.ac.uk
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Top ten reasons to not share your code (and why you should anyway)
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library.mpib-berlin.mpg.de library.mpib-berlin.mpg.de
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papers.ssrn.com papers.ssrn.com
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Possibly relevant to ReproNIM?
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science.sciencemag.org science.sciencemag.org
- Oct 2016
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mindingthebrain.blogspot.com mindingthebrain.blogspot.com
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www.youtube.com www.youtube.com
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linkeddatabook.com linkeddatabook.com
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Linked Data: Evolving the Web into a Global Data Space
A comprehensive book on linked data.
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www.speirs.org www.speirs.org
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www.datacarpentry.org www.datacarpentry.org
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Data Carpentry develops and teaches workshops on the fundamental data skills needed to conduct research.
Training for data skills
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- Sep 2016
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www.biorxiv.org www.biorxiv.org
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camh-scwg.github.io camh-scwg.github.io
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camh-scwg.github.io camh-scwg.github.io
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Cool R tricks, Thanks, Erin!
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neurohackweek.github.io neurohackweek.github.io
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www.nhlbi.nih.gov www.nhlbi.nih.gov
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events.brainhack.org events.brainhack.org
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2016 Brainhack LA
ReproNim co-sponsored event.
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www.bigdatau.org www.bigdatau.org
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The BD2K Guide to the Fundamentals of Data Science Series
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cryptogenomicon.org cryptogenomicon.org
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www.eur.nl www.eur.nl
- Aug 2016
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journals.plos.org journals.plos.org
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Ten Simple Rules for Effective Statistical Practice
A very nice overview of things to keep in mind when designing experiments and analyzing data with statistics
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neurohackweek.github.io neurohackweek.github.io
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Lesson template for Neurohackweek
A GitHub template for creating lesson plans. While this doesn't provide the flexibility of a computational environment within this lesson plan, it serves as a good approach to outline concepts of lessons.
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asterisk.dynevor.org asterisk.dynevor.org
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asterisk.dynevor.org asterisk.dynevor.org
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www.talyarkoni.org www.talyarkoni.org
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github.com github.com
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bd2kccc.org bd2kccc.org
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BD2KCCC Webinars
BD2K Events that may be of general interest.
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bitbucket.org bitbucket.org
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TACC Scientific Apps -- Docker containers to be used on HPC
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www.futurelearn.com www.futurelearn.com
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answers.semanticweb.com answers.semanticweb.com
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a very good first introduction to linked data / semantic web technologies with the "good and bad" ...
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- Jul 2016
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journals.plos.org journals.plos.org
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Ten Simple Rules for Reproducible Computational Research
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force11.github.io force11.github.io
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Data Citations: A Primer
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www.revolvy.com www.revolvy.com
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services.github.com services.github.com
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matthew-brett.github.io matthew-brett.github.io
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github.com github.com
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blogs.warwick.ac.uk blogs.warwick.ac.uk
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Bibliometrics of Cluster Inference
ReproNIM should publish a set of guidelines for editors for evaluating and reporting resting state studies.
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learningequality.org learningequality.org
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An offline version of Khan Academy.
A lightweight deployable platform for teaching from khan academy.
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www.cambridgesemantics.com www.cambridgesemantics.com
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A beginner's introduction to Semantic Web and Linked Data.
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try.github.io try.github.ioTry Git1
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Got 15 minutes and want to learn Git?
A tutorial from GitHub to learn git.
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- Jun 2016
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www.nih.gov www.nih.govTraining1
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Training
NIH efforts towards reproducibility. This includes videos for training and discussion material as well.
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www.nature.com www.nature.com
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Nature Methods' Points of Significance column on statistics explains many key statistical and experimental design concepts.
Collection of Nature papers: Statistics for biologists
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mybinder.org mybinder.orgbinder1
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FOSS service binding together Jupyter and Kubernetes (to manage docker images) to provide executable Jupyter notebooks.
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github.com github.com
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Collection of pipeline toolkits
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prakhar.me prakhar.me
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www.w3schools.com www.w3schools.com
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www.openaire.eu www.openaire.eu
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This is primarily for scholarly communication but also link to Zenodo for data I would tag with ReproNim:RelatedProject (in addition to current tags)
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singularity.lbl.gov singularity.lbl.gov
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An alternative to docker that Chris says is better for cluster and is designed for reproducibility
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www.uke.de www.uke.de
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SPM 2016 course
The 19th annual course for functional MR imaging (SPM) takes from 26 - 28 September 2016 instead. Due to the significant demand for an intensive training in the various methods in this field, takes the course of this year for the first time exclusively as an intensive course over 3 days instead and covers all areas, both of the first attempts to start with SPM to own to developments program codes from , The previous division into a pure beginner and Fortgeschrittenen- part is thus eliminated.
Date: 26 - 28 September 2016 Location: Hamburg
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schoolofdata.org schoolofdata.org
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School of Data works to empower civil society organizations, journalists and citizens with the skills they need to use data effectively – evidence is power!
Don't know if this is too beginner for ReproNIM audience, but it has some nice tutorials on how to clean data or extract data from web pages for novices.
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www.incf.org www.incf.org
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INCF Short course 2016
TItle: INCF Short course 2016 Dates: 31 August – 1 September, 2016 Location: Penta Hotel, Oxford Road, Reading RG1 7RH, United Kingdom
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python.g-node.org python.g-node.org
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Advanced Scientific Programming in Python
Title: Advanced Scientific Programming in Python Dates: September 5—11, 2016. Location: Reading, UK
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www.eventbrite.com www.eventbrite.com
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THOR Workshop
Date: July 7, 2016 Location: Amsterdam, Netherlands Type: Workshop
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github.com github.com
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A platform to facilitate collection of provenance information about ran analyses. Somewhat similar in idea to https://pythonhosted.org/Sumatra/
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www.youtube.com www.youtube.com
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clearly for introduction, lasts 15 min, very clear, would be great to have a couple of exercices to accompany the video
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- May 2016
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xpra.org xpra.org
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www.pgbovine.net www.pgbovine.net
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vida-nyu.github.io vida-nyu.github.io
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