- Sep 2023
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medialab.github.io medialab.github.io
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www.med-ai.com www.med-ai.com
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arrowsmith.psych.uic.edu arrowsmith.psych.uic.edu
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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arrowsmith.psych.uic.edu arrowsmith.psych.uic.edu
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pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.govPubMed1
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.govMeshable1
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www.biorxiv.org www.biorxiv.org
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MinervaMaríaRomeroPérez
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tagteam.harvard.edu tagteam.harvard.edu
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www.dcc.ac.uk www.dcc.ac.uk
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rd-alliance.github.io rd-alliance.github.ioTools1
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dmptool.org dmptool.orgDMPTool1
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fairsharing.org fairsharing.org
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Annotators
URL
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ufal.github.io ufal.github.io
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Licencias
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osf.io osf.io
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BIOmedicina
Tags
Annotators
URL
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app.magicapp.org app.magicapp.orgMAGICapp1
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BIOmedicina
Tags
Annotators
URL
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www.worldcat.org www.worldcat.org
Tags
Annotators
URL
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www.doabooks.org www.doabooks.org
Tags
Annotators
URL
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doaj.org doaj.org
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revistas,acceso_abierto,numeralia
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creativecommons.org creativecommons.org
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publicationethics.org publicationethics.org
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buenas_practicas
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sharing.nih.gov sharing.nih.gov
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journals.plos.org journals.plos.org
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www.nature.com www.nature.com
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politicas_datos
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v2.sherpa.ac.uk v2.sherpa.ac.uk
Tags
Annotators
URL
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v2.sherpa.ac.uk v2.sherpa.ac.uk
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directorio_repositorios,https://twitter.com/OpenDOAR
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github.com github.com
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www.cos.io www.cos.io
Tags
Annotators
URL
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alleninstitute.org alleninstitute.org
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nsteffel.github.io nsteffel.github.io
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www.unesco.org www.unesco.org
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www.fosteropenscience.eu www.fosteropenscience.eu
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openresearchcalendar.org openresearchcalendar.org
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tobloef.com tobloef.com
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voyant-tools.org voyant-tools.org
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scicrunch.org scicrunch.org
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evol.mcmaster.ca evol.mcmaster.caEvolDir1
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www.shanlaxjournals.in www.shanlaxjournals.in
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revista.profesionaldelainformacion.com revista.profesionaldelainformacion.com
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www.denizcemonduygu.com www.denizcemonduygu.com
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DataViz
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hypothes.is hypothes.is
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js.histropedia.com js.histropedia.com
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js.histropedia.com js.histropedia.com
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docs.google.com docs.google.com
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Total 52 (13sep20)
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scicrunch.org scicrunch.org
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fairsharing.org fairsharing.org
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firstdraftnews.org firstdraftnews.orgToolkit1
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firstdraftnews.org firstdraftnews.org
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scicrunch.org scicrunch.org
Tags
Annotators
URL
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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oad.simmons.edu oad.simmons.edu
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repositorios_disciplinares
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www.metrics-toolkit.org www.metrics-toolkit.org
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digitalresearchtools.pbworks.com digitalresearchtools.pbworks.com
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www.journaliststoolbox.org www.journaliststoolbox.org
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localcitationnetwork.github.io localcitationnetwork.github.io
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www.nlm.nih.gov www.nlm.nih.gov
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favorito
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log.bede.im log.bede.imPubtree1
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PubMed
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Annotators
URL
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thinkcheckattend.org thinkcheckattend.org
Tags
Annotators
URL
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scirev.org scirev.org
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www.wizdom.ai www.wizdom.ai
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loadb.org loadb.org
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Annotators
URL
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github.com github.com
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developers.google.com developers.google.com
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microsoft.github.io microsoft.github.io
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lookerstudio.google.com lookerstudio.google.com
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public.tableau.com public.tableau.com
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www.paper-digest.com www.paper-digest.com
Tags
Annotators
URL
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www.semanticscholar.org www.semanticscholar.org
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www.scholarcy.com www.scholarcy.com
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Annotators
URL
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researcherssite.com researcherssite.com
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en.wikipedia.org en.wikipedia.org
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biocreative.sourceforge.net biocreative.sourceforge.net
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PubMed
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hub.steampipe.io hub.steampipe.io
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CajaHErramientas
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Annotators
URL
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www.wikidata.org www.wikidata.org
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CajaHerramientas
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joinmastodon.org joinmastodon.org
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BIOmastodonte
CajaHerramientas
Tags
Annotators
URL
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digitalscholar.org digitalscholar.org
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CajaHerramientas
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centri.unibo.it centri.unibo.itProjects1
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CajaHerramientas
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dhresourcesforprojectbuilding.pbworks.com dhresourcesforprojectbuilding.pbworks.com
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CajaHerramientas
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libguides.d.umn.edu libguides.d.umn.edu
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CajaHerramientas
Tags
Annotators
URL
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iatext.ulpgc.es iatext.ulpgc.es
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CajaHerramientas
Tags
Annotators
URL
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www.dariah.eu www.dariah.eu
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CajaHerramientas
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sites.google.com sites.google.com
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metrics
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www.vosviewer.com www.vosviewer.com
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kit_bibliometria
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royalsocietypublishing.org royalsocietypublishing.org
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ColoraciónVisionColor
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www.accefyn.com www.accefyn.com
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LaylaMichánAguirre
MetricsBIOhistoria
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ve.scielo.org ve.scielo.org
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LaylaMichánAguirre
MetricsBIOhistoria
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www.mattioli1885journals.com www.mattioli1885journals.com
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Based on the keywords, 2,019 manuscripts were identified, of which 45 were included
Fuente de información
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ArticuloPubMed
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journals.biologists.com journals.biologists.com
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MariposasAzules
MariposasBIOcolores
Iridisencia
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www.sciencedirect.com www.sciencedirect.com
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PigmentosBIocolores
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link.springer.com link.springer.com
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PigmentosBIOcolores
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royalsocietypublishing.org royalsocietypublishing.org
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MariposasAzules
MariposasBIOcolores
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- Aug 2023
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docs.google.com docs.google.com
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docs.google.com docs.google.com
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docs.google.com docs.google.com
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docs.google.com docs.google.com
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docs.google.com docs.google.com
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docs.google.com docs.google.com
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MinervaMaríaRomeroPérez
ColoresColeopteros
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docs.google.com docs.google.com
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docs.google.com docs.google.com
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docs.google.com docs.google.com
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LaylaMichánAguirre
PNBIocolores
Qué organismos tienen Cianidina y Delfinidina?
En qué estructuras? Hacerlo cómo colibríes
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docs.google.com docs.google.com
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docs.google.com docs.google.com
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docs.google.com docs.google.com
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docs.google.com docs.google.com
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docs.google.com docs.google.com
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docs.google.com docs.google.com
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docs.google.com docs.google.com
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docs.google.com docs.google.com
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docs.google.com docs.google.com
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notas.niboe.org notas.niboe.org
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BIOmastodonte
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Annotators
URL
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nathanlesage.github.io nathanlesage.github.io
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BIOmastodonte
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www.ukogorter.com www.ukogorter.com
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BancoImagenesBiocolores
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link.springer.com link.springer.com
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MariposasBIOcolores
ModeladoAlasMariposa
LepidopteraBIocolores
PlanEstructural
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onlinelibrary.wiley.com onlinelibrary.wiley.com
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MariposasBIOcolores
ModeladoAlasMariposa
Cerrado
LepidopteraBIocolores
PlanEstructural
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onlinelibrary.wiley.com onlinelibrary.wiley.com
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MariposasBIOcolores
ModeladoAlasMariposa
SinAcceso
LepidopteraBIocolores
PlanEstructural
Seminal
Este es un buen ejemplo para hacer análisis de citas
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www.vifabio.de www.vifabio.de
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Bibliográfica
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news.mit.edu news.mit.edu
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MariposasBIOcolores
ModeladoAlasMariposa
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opg.optica.org opg.optica.org
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MariposasBIOcolores
ModeladoAlasMariposa
Tags
Annotators
URL
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www.scielo.org.bo www.scielo.org.bo
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BIologiaDigital
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www.biodiversitylibrary.org www.biodiversitylibrary.org
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LoboMarino
Tags
Annotators
URL
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www.biodiversitylibrary.org www.biodiversitylibrary.org
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LoboMarino
En este autor se baso Shaw para describir en 1800 la especies
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ouci.dntb.gov.ua ouci.dntb.gov.ua
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LoboMarino
Tags
Annotators
URL
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resolver.globalnames.org resolver.globalnames.org
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BIOnombres
Synopsis Scientific names are critical metadata elements in biodiversity. They are the scaffolding upon which all biological information hangs. However, scientific names are imperfect identifiers. Some taxa share the same name (e.g. homonyms across nomenclature codes) and there can be many names for the same taxon. Names change because of taxonomic and nomenclatural revisions and they can be persistently misspelled in the literature. Optical scanning of printed material compounds the problem by introducing greater uncertainty in data integration.
This resolution service tries to answer the following questions about a string representing a scientific name:
Is this a name? It is spelled correctly? Is this name currently in use? What other names are related to this name (e.g. synonyms, lexical variants)? If this name is a homonym, which is the correct one? Matching Process 1. Exact Matching Submitted names are checked for exact matches against names in specified data sources or against the entire resolver database. If "resolve_once" is specified in the API, found names are immediately removed from the process instead of being resolved against all specified data sources. This significantly accelerates matching and can be used to discover if a string is in fact a name.
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Exact Matching of Canonical Forms Name strings are often supplied with complex authorship information [e.g. Racomitrium canescens f. epilosum (H. Müll. ex Milde) G. Jones in Grout]. The Global Name parser strips authorship and rank information from names [e.g. Racomitrium canescens epilosum], which makes it possible to compare the string with other variants of the same name. Resulting canonical forms are checked for exact matches against canonical forms in specified data sources or in the entire resolver database. All found names are removed from the process at the completion of this step.
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Fuzzy Matching of Canonical Forms Mistakes, misspellings, or OCR errors can create incorrect variants of scientific names. Remaining canonical forms generated from the previous step are fuzzily matched against canonical forms in specified data sources. We use a modified version of the TaxaMatch algorithm developed by Tony Rees. After this step all found names are removed from the process.
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Exact Matching of Specific Parts of Names Some names are recognized by the parser as infraspecific names, which were not found during previous steps of the process. This may be because the name is unknown to the resolver database. Sometimes a 'junk' word is wrongly included and the parser may recognize it as an infraspecific epithet. The algorithm extracts specific canonical forms from names recognized as infraspecific and tries to match this subset of names against datasources or the entire resolver database. For example, "Pardosa moesta spider" will be cleansed and matched as "Pardosa moesta". All found names are removed from the process prior to proceeding to the following steps.
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Fuzzy Matching of Specific Parts of Names Remaining names to be processed are fuzzily matched then removed.
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Exact Matching of Genus Part of Names Remaining names in the process as well as all remaining binomial canonical forms are reduced to the genus part and matched against the data sources or the entire database.
Taxonomic Context If the "with_context" parameter is set to "true", the overall taxonomic group of all matched names is collected throughout the process. Scores for possible homonym matches are down-weighted if the resolved names do not belong to the overall taxonomic group of the queried list. If this is undesirable behavior, this parameter may be set to "false".
Confidence Score Matched names fall into several categories. For example, if the name Aotus gets perfectly matched as a plant genus, this may be incorrect if the queried name actually refers to a genus of monkey. Another example is poor fuzzy matching. The name Afina can be fuzzily matched to the genus Alina in the Order Lepidoptera. Matches of trinomial or binomial names have greater accuracy. Matching of authorship information further increases the likelihood of a correct match. However, different authorship does not always mean different taxonomic meaning. For example, Monochamus galloprovincialis (Olivier, 1795) and Monochamus galloprovincialis Secchi, 1998 both refer to the same species, where the former indicates the original author of the name and the latter is merely a reference to the name. The name resolver produces a "confidence score" to accommodate all these potential issues. The score is produced from a curvilinear plot of weighted decisions.
Confidence Score Graph We start at 0 on the x-axis and assign positive values for events that increase the probability score, and negative values to events that decrease it. For example, an exact match of a binomial name increases the probability significantly, so we adjust the slider 3 points to the right with a corresponding score of 0.988. However, if the authorship of the name did not get correctly matched, we adjust the slider 2 points to the left, to a corresponding score of 0.75. We try to map confidence level the with resulting scores. For example, 0.5 means neutral confidence whereas 0.99 mean high confidence.
Global Names Architecture| Global Names Recognition & Discovery| Global Names Integrated Taxonomic Editor
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Tags
Annotators
URL
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github.com github.com
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BIOnombres
Tags
Annotators
URL
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globalnames.org globalnames.orgNews1
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BIOnombres
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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BIOnombres
Tags
Annotators
URL
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journals.plos.org journals.plos.org
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BIOnombres
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Annotators
URL
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www.sciencedirect.com www.sciencedirect.com
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BIOnombres
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zookeys.pensoft.net zookeys.pensoft.net
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BIOnombres
Tags
Annotators
URL
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-
zookeys.pensoft.net zookeys.pensoft.net
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BIOnombres
Tags
Annotators
URL
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journals.plos.org journals.plos.org
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BIOnombres
Tags
Annotators
URL
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-
bdj.pensoft.net bdj.pensoft.net
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BIOnombres
Tags
Annotators
URL
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-
bmcbioinformatics.biomedcentral.com bmcbioinformatics.biomedcentral.com
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BIOnombres
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bmcecol.biomedcentral.com bmcecol.biomedcentral.com
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BIOnombres
BIologiaDigital
-
-
academic.oup.com academic.oup.com
-
BIOnombres
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-
zookeys.pensoft.net zookeys.pensoft.net
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BIOnombres
Tags
Annotators
URL
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-
zookeys.pensoft.net zookeys.pensoft.net
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BIOnombres
Tags
Annotators
URL
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-
bmcbioinformatics.biomedcentral.com bmcbioinformatics.biomedcentral.com
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BIOnombres
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-
bmcecolevol.biomedcentral.com bmcecolevol.biomedcentral.com
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BIOnombres
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-
www.hindawi.com www.hindawi.com
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BIOnombres
Tags
Annotators
URL
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-
academic.oup.com academic.oup.com
-
BIOnombres
-
-
journals.ku.edu journals.ku.edu
-
BIOnombres
Tags
Annotators
URL
-
-
zenodo.org zenodo.org
-
BIOnombres
-
-
globalnames.org globalnames.org
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BIOnombres
Tags
Annotators
URL
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-
www.sil.si.edu www.sil.si.edu
-
fishbase.mnhn.fr fishbase.mnhn.fr
-
-
www.animalbase.uni-goettingen.de www.animalbase.uni-goettingen.de
-
LoboMarino MariposasBIOcolores
bibliografica
-
-
royalsocietypublishing.org royalsocietypublishing.org
-
ColorAposemático
TemasPrincipales: Evolución
CLIOhistoria
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-
www.biorxiv.org www.biorxiv.org
-
academic.oup.com academic.oup.com
-
MetricsBIOhistoria
Mis notas
-Me gusta el argumento: integra biología, historia y cienciometría
-Sería interesante usar CiTO para analizar con detalle la intención de las citas
-El enfoque es singular y el método también
-Si hubiera colaborado con algún especialista en cienciometría hubiera podido hacer algo mucho más interesante y completo, es una gran idea pero falto argumentación y discusión sobre citación, seguramente el trabajo fue revisado sólo por biológos.
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horizon.documentation.ird.fr horizon.documentation.ird.fr
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LaylaMichánAguirre
-
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cshlpress.com cshlpress.com
Tags
Annotators
URL
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-
www.frontiersin.org www.frontiersin.org
-
www.annualreviews.org www.annualreviews.org
-
www.nature.com www.nature.com
-
www.sciencedirect.com www.sciencedirect.com
-
bioone.org bioone.org
Tags
Annotators
URL
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-
arep.med.harvard.edu arep.med.harvard.edu
-
pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
-
link.springer.com link.springer.com
-
plato.stanford.edu plato.stanford.edu
-
bmcbioinformatics.biomedcentral.com bmcbioinformatics.biomedcentral.com
-
www.nature.com www.nature.com
Tags
Annotators
URL
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-
mitpress.mit.edu mitpress.mit.edu