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  1. Last 7 days
    1. 30-year-old c

      Case#: 30 year old female athlete

      DiseaseAssertion: Subclinical hypertrophic cardiomyopathy

      FamilyInfo: Her mother has HCM and the same ACTC1 gene change. Her grandmother and uncle on her mothers side died suddenly.

      ParentalTesting: Her mother tested positive for the ACTC1 gene change and there isn't any information about the father.

      CasePresentingHPOs: NR

      CaseHPOFreeText: The patient did not have dizziness, fainting, trouble breathing or chest pain. Her heart muscle was not thickened.

      CaseNotHPOs: NR

      CaseNotHPOFreeText: The patient sometimes felt her heart beating unusually during exercise. A heart MRI showed small changes in her heart muscle and heart valve.

      CasePreviousTesting: The patient had an ECG, heart ultrasound, heart monitor and heart MRI

      Genotyping Method:Sanger sequencing was used to test the ACTC1 gene.

      FunctionalAnalysis: NR

      Variant: ACTC1 p.Val11Leu

      Clinvar: 2947021

      CAID: CA391633409

      gnomAD: NR

      AdditionalInfo: The patient continued playing competitive sports and had regular heart checkups.

    1. A de novo heterozygous ACTC1 variant (NM_005159.5; c.650A>C, p.Lys217Thr) was found in Individual 2.

      Case:Male, born at 39 weeks of gestation, evaluated during infancy-age 6. DiseaseAssertion:Arthrogryposis multiplex congenita (AMC). The patient also had Shone's complex with coarctation of the aorta. Cardiomyopathy not reported. Familyinfo:The patient was the first child of unrelated parents. No family history of arthrogryposis multiplex congenita was reported. ParentalTesting:The ACTC1 c.650A>C (p.Lys217Thr) variant was identified as de novo. Neither parent was reported to carry the variant. CasePresentingHPOs:Limited range of motion in wrists, Limited range of motion in fingers, Limited range of motion in thumbs, Hip contractures, Knee contractures, Bilateral clubfeet, Clenched hands, Hypotonia, Lower extremity weakness, CaseHPOFreeText:The patient was born at 39 weeks of gestation. At birth, he had limited range of motion in the wrists, fingers, thumbs, hips, and knees, along with bilateral clubfeet. Echocardiography revealed Shone's complex, including coarctation of the aorta, which required surgical repair. At age 1, he had clenched hands with deep single palmar creases, overlapping toes, and hypoplastic fifth toenails. He also had truncal hypotonia, mild lower extremity weakness, and delayed gross motor milestones. At age 3, moderate wrist contractures, thumb-in-palm deformities, and mild bilateral hip contractures were observed. He began walking independently at age 4. At age 5, he underwent additional heart surgery and pacemaker insertion. CaseNotHPOs:Scoliosis: not identified on spine X-rays, cognitive difficulties: not reported CaseNOTHPOFreeText:The patient did not have reported cognitive difficulties. Spine X-rays did not reveal scoliosis. CasePreviousTesting:Genome sequencing was performed to identify genetic variants associated with the patient's clinical presentation. Echocardiography was used to identify Shone's complex and coarctation of the aorta. GenotypingMethod:Genome sequencing. Plasmid sequences used for the functional experiments were verified by Sanger sequencing. FunctionalAnalysis:In vitro functional studies were performed using MC3T3-E1 preosteoblastic cells. The p.Lys217Thr variant did not demonstrate a clear effect on ACTC1 protein expression or localization compared with wild-type ACTC1. The authors reported no apparent reduction in protein levels or impaired actin filament organization. Variant:NM_005159.5 (ACTC1): c.650A>C; p.Lys217Thr. ClinVar:not reported CAID:not reported gnomAD:not reported AdditionalInfo:The variant was identified as de novo and classified as likely pathogenic using ACMG criteria (PS2, PM1, PM2, PP2, PP3). Although functional testing did not demonstrate a clear effect on ACTC1 protein expression or localization, the authors considered the variant likely pathogenic based on the genetic and clinical evidence.

    2. Genome sequencing identified a heterozygous ACTC1 variant (NM_005159.5; c.325G>A, p.Glu109Lys) in Individual 1 and her mother. The variant was absent from gnomAD v2.1.1, had an AlphaMissense score of 0.99 and a REVEL score of 0.827. It was classified as likely pathogenic with ACMG criteria (PM1, PM2, PP1, PP2, PP3).

      Case:Female, born at 34 weeks of gestation, 5 years old at the first detailed examination, 8 years old during a later clinical description. DiseaseAssertion:Arthrogryposis multiplex congenita (AMC). Cardiomyopathy not reported. Familyinfo:The patient was the first child of unrelated parents. Her mother and one maternal aunt were born with bilateral clubfeet and later developed scoliosis. The mother also had a history of cleft palate. Neither the mother nor the patient had a reported history of cardiac problems. ParentalTesting:The patient's mother carried the same heterozygous ACTC1 c.325G>A (p.Glu109Lys) variant. The variant was therefore inherited from the mother. CasePresentingHPOs:Bilateral clubfeet, scoliosis, cleft palate, neck webbing, camptodactyly, joint contractures. CaseHPOFreeText:The patient was born by cesarean section at 34 weeks of gestation. Bilateral clubfeet, cleft palate, neck webbing, and spinal deformity were noted. At age 5, she had severe scoliosis measuring 120 degrees and severe short stature. At age 8, mild camptodactyly of both hands and mild contractures of the neck, left hip, both knees, and feet were observed. She had no significant mobility or cognitive difficulties and was independent in self-care activities. CaseNotHPOs:No reported cardiac problems, no significant cognitive difficulties, no significant mobility difficulties. CaseNOTHPOFreeText:The patient had no reported cardiac phenotype despite carrying an ACTC1 variant. Her mother also had no history of cardiac problems. CasePreviousTesting:Genome sequencing was performed to identify genetic variants associated with the patient's clinical presentation. GenotypingMethod:Genome sequencing. Plasmid sequencing was also verified by Sanger sequencing for the experimental functional studies. FunctionalAnalysis:In vitro functional studies were performed using MC3T3-E1 preosteoblastic cells. The p.Glu109Lys variant caused decreased ACTC1 protein levels and impaired actin filament assembly. Immunofluorescence and Western blotting were used to evaluate protein expression and actin filament organization. Variant:NM_005159.5 (ACTC1): c.325G>A; p.Glu109Lys. ClinVar:not reported CAID:not reported gnomAD:not found AdditionalInfo:The variant was inherited from the patient's mother, who also had bilateral clubfeet, scoliosis, and a history of cleft palate. The authors classified the variant as likely pathogenic using ACMG criteria (PM1, PM2, PP1, PP2, PP3). The functional studies demonstrated reduced ACTC1 protein levels and impaired actin filament assembly.

    1. woman with autosomal dominant Alport syndrome (ADAS) with a family history of left ventricular noncompaction cardiomyopathy (LVNC). Exome sequencing identified a rare heterozygous variant in COL4A4, NM_000092.5: c.2510G>C (p.G837A), and a novel heterozygous variant in ACTC1, NM_005159.5: c.922T>C (p.Y308H), as causes of ADAS and LVNC, respectively.

      Case:Female, 21. DiseaseAssertion:Left ventricular noncompaction cardiomyopathy (LVNC). Familyinfo:The patient's father had hypertrophic cardiomyopathy. Her paternal grandfather and paternal uncle also reportedly had cardiac disease, although detailed clinical information was unavailable. The patient's mother had microscopic hematuria and was diagnosed with thin basement membrane nephropathy. The maternal grandmother also had a history of kidney disease. ParentalTesting:The mother was tested and did not carry the ACTC1 c.922T>C variant. The father could not be tested because the patient had no contact with him. The authors presumed paternal inheritance of the ACTC1 variant based on the family history, but paternal inheritance was not genetically confirmed. CasePresentingHPOs:Left ventricular noncompaction cardiomyopathy, Abnormal cardiac morphology, Cardiac hypertrophy, Hematuria CaseHPOFreeText: The patient had microscopic hematuria beginning at age 6. At the same age, routine school screening identified cardiac dysfunction, and echocardiography revealed a myocardial densification defect. At age 21, echocardiography showed a noncompacted-to-compacted myocardial ratio greater than 2:1, consistent with LVNC. Electrocardiography showed sinus rhythm with ST-T wave flattening in leads V4–V6, indicative of cardiac hypertrophy. The patient remained without cardiac symptoms and had a normal ejection fraction. Her BNP level increased to 204 pg/mL. She had normal renal function, with a serum creatinine level of 0.58 mg/dL, and no proteinuria. CaseNotHPOs:Hearing impairment: not reported, Ophthalmological abnormalities: not reported, Cardiac symptoms: not reported CaseNOTHPOFreeText:The patient remained asymptomatic despite the cardiac findings. No hearing impairment or ophthalmological abnormalities were identified. CasePreviousTesting:Echocardiography identified LVNC during childhood. Further cardiac evaluation included electrocardiography and follow-up BNP measurements. Renal evaluation included serum creatinine testing, urinalysis, abdominal ultrasonography, and genetic evaluation for hereditary kidney disease. GenotypingMethod:Whole exome sequencing was performed using DNA extracted from the patient's blood sample. Sanger sequencing was used to confirm both identified variants. The mother's DNA was also analyzed to determine inheritance. FunctionalAnalysis:No direct functional studies were performed on the ACTC1 variant. The authors used AlphaFold3 protein structure prediction to examine the effect of the amino acid substitution. The variant was located near the ATP-binding site, suggesting a possible effect on ACTC1 function and ATP binding. Variant:NM_005159.5 (ACTC1): c.922T>C; p.(Tyr308His). ClinVar:accession: VCV000948806.7. CAID:not reported gnomAD:not reported AdditionalInfo:The patient carried two separate heterozygous variants associated with different conditions. The COL4A4 c.2510G>C (p.Gly837Ala) variant was associated with autosomal dominant Alport syndrome, while the ACTC1 c.922T>C (p.Tyr308His) variant was identified as a candidate associated with LVNC. The ACTC1 variant was classified as a variant of uncertain significance (VUS) by the authors using ACMG criteria (PM2, PP3, PP4). The authors noted that there were no functional studies confirming its effect on ACTC1 protein function.

    1. PatientID: None

      KindredID: 26

      Case: Sex Unknown, Age Unknown, Japanese

      DiseaseAssertion: VHL

      FamilyInfo: N/A

      CasePresentingHPOs: HP:0010797; HP:0009711; HP:0005584 (Hemangioblastoma, Retinal capillary hemangioma, Renal cell carcinoma)

      CaseHPOFreeText: CNS hemangioblastoma, retinal angioma and renal cell carcinoma.

      CaseNotHPOs: HP:0001732 (Abnormality of the pancreas)

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: 8634692 (variants differ by one base pair; unclear which is accurate)

      SupplementalData: N/A

      Variant: p.D143Efs*13 (c.429_438del)

      LegacyVariant: c.642del10bp

      CaseProblemVariantFreeText: N/A

      ClinVarID: N/A

      CAID: CA2573131814, https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=CA2573131814

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: deletion; minus_1_frameshift_variant

      CivicName: D143Efs*13 (c.429_438del)

      MultipleGeneVariants: N/A

    1. F10

      PatientID: I.2

      KindredID: F10

      Case: F, Age Unknown, Ethnicity Unknown

      DiseaseAssertion: Asymptomatic

      FamilyInfo: This patient’s partner and two children were all carriers of the D143= (c.429C>T) germline VHL variant. Their son was diagnosed with splenomegaly and polycythemia and was homozygous for the variant. All other family members were asymptomatic.

      CasePresentingHPOs: N/A

      CaseHPOFreeText: N/A

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.D143= (c.429C>T)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: 416990, https://www.ncbi.nlm.nih.gov/clinvar/variation/416990/

      CAID: N/A

      gnomAD: 0.000007953, https://gnomad.broadinstitute.org/variant/3-10188286-C-T?dataset=gnomad_r2_1

      VariantEvidence: N/A

      MutationType: missense_variant;transition; synonymous_variant

      CivicName: D143= (c.429C>T)

      MultipleGeneVariants: N/A

    1. PMID: 7977367

      PatientID: N/A

      KindredID: A-498 (cell line)

      Case: Sex Unknown, Age Unknown, Ethnicity Unknown

      DiseaseAssertion: Renal cell carcinoma

      FamilyInfo: N/A

      CasePresentingHPOs: HP:0005584 (renal cell carcinoma)

      CaseHPOFreeText: Described as sporadic RCC from cell line A-498

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.D143Tfs*29 (c.426_430del)

      LegacyVariant: p.213fs (c.639_642del4)

      CaseProblemVariantFreeText: N/A

      ClinVarID: N/A

      CAID: CA2573131758 https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=CA2573131758

      gnomAD: N/A

      VariantEvidence:N/A

      MutationType: minus_1_frameshift_variant

      CivicName: D143fs (c.426_430del)

      MultipleGeneVariants: N/A

  2. Oct 2026
    1. F10

      PatientID: I.1

      KindredID: F10

      Case: M, Age Unknown, Ethnicity Unknown

      DiseaseAssertion: Asymptomatic

      FamilyInfo: This patient’s partner and two children were all carriers of the D143= (c.429C>T) germline VHL variant. Their son was diagnosed with splenomegaly and polycythemia and was homozygous for the variant. All other family members were asymptomatic.

      CasePresentingHPOs: N/A

      CaseHPOFreeText: N/A

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.D143= (c.429C>T)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: 416990, https://www.ncbi.nlm.nih.gov/clinvar/variation/416990/

      CAID: N/A

      gnomAD: 0.000007953, https://gnomad.broadinstitute.org/variant/3-10188286-C-T?dataset=gnomad_r2_1

      VariantEvidence: N/A

      MutationType: missense_variant;transition; synonymous_variant

      CivicName: D143= (c.429C>T)

      MultipleGeneVariants: N/A

    2. F10, II.1c.429C>T/c.429C>TVHL p.Asp143Asp/VHL p.Asp143Asp2002/4.5 yF22.564-77.412.6264Erythrocytosis, splenomegalyβ thalassemia

      PatientID: II.1

      KindredID: F10

      Case: M, 4Y6M, Ethnicity Unknown

      DiseaseAssertion: Polycythemia

      FamilyInfo: This patient’s asymptomatic patients were both found to be carriers of the D143= (c.429C>T) germline variant in VHL. Their other child (II.2) also carried the gene. The current patient was the only one who was homozygous for the variant.

      CasePresentingHPOs: HP:0001901; HP:0001744 (Polycythemia, Splenomegaly)

      CaseHPOFreeText: Diagnosed with erythrocytosis (Polycythemia) and splenomegaly at 4.5 years old (DOB: 2002).

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.D143= (c.429C>T)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: 416990, https://www.ncbi.nlm.nih.gov/clinvar/variation/416990/

      CAID: N/A

      gnomAD: 0.000007953, https://gnomad.broadinstitute.org/variant/3-10188286-C-T?dataset=gnomad_r2_1

      VariantEvidence: Variant is present in allele 1 and 2 (i.e. homozygous).

      MutationType: missense_variant;transition; synonymous_variant

      CivicName: D143= (c.429C>T)

      MultipleGeneVariants: Germline, Beta Thalassemia