410 Matching Annotations
  1. Apr 2015
    1. To suggest that faculty are innocently waiting to be pounced on by predators is to deny their agency and their ability to make choices about their own work. There may be days where that metaphor seems apt, but I think overall this is a damaging mentality to librarians interested in promoting new models of scholarly communication.

      A nice point about how librarians need to be thoughtful in the way they present the pitfalls of the emerging open access model of scholarly communication.

  2. Feb 2015
  3. Jan 2014
    1. If federally funded research is going to broadly benefit society, it has to be widely accessible, not just to curious private citizens, but also to industries, private organizations, and federal, state, and local governments where scientific knowledge can help create new products, solve problems, educate students, and make policy decisions.

      It is The People who will most benefit from open access to federally funded research.

    2. Giving the public what it paid for sounds noble, but from where I sit, a scientist at a well-funded research university, ensuring that research papers are available to the public for free seems pointless.

      This seems to be a comment sentiment-- the open access arguments don't address the individual "what's in it for me?" question. And it is not wrong for people to be asking this question-- not just what benefits them, but also what misery are they in for if they start down this unknown (and possibly treacherous) path? It is the rare few intrepid leaders in this space that can see beyond the immediate benefits and risks-- that can see a new world of science that could exist and are willing to make the epicly dangerous journey along with their loyal argonauts who can withstand the siren song and sail safely through the academic scylla and charybdis.

    1. The database should have an associated web site for access by internal researchers working on atlas construction and quite likely a separate Web site for public access to published datasets.

      Need for web site access by internal researchers vs web-based public access to published datasets

    2. The initial inputs for deriving quantitative information of gene expression and embryonic morphology are raw image data, either of fluorescent proteins expressed in live embryos or of stained fluorescent markers in fixed material. These raw images are then analyzed by computational algorithms that extract features, such as cell location, cell shape, and gene product concentration. Ideally, the extracted features are then recorded in a searchable database, an atlas, that researchers from many groups can access. Building a database with quantitative graphical and visualization tools has the advantage of allowing developmental biologists who lack specialized skills in imaging and image analysis to use their knowledge to interrogate and explore the information it contains.

      1) Initial input is raw image data 2) feature extraction on raw image data 3) extracted features stored in shared, searchable database 4) database available to researchers from many groups 5) quantitative graphical and visualization tools allow access to those without specialized skill in imaging and image analysis

  4. Nov 2013