1,440 Matching Annotations
  1. May 2017
    1. ss developed countries who have yet to implement these screening procedures continue to have higher rates of transmission

      how much higher? be specific because the real numbers are more compelling than "higher" and "decrease"

    2. blood prior to 1990 at risk for contracting HCV

      again, you have a cool story, make sure you tell it. e.g., Prior to 1990, blood donations were not screened for HCV and as a consequence, xxxx number of people contracted HCV through blood transfusions. Donor screening has decreased HCV infection through blood transfusions to XXX.

    3. HCV is typically spread from person to person by blood to blood contact, where the most common risk factors for contracting the virus are IV drug use and receiving a blood donation before 1990 (Lauer 41). There is also a risk of infection through sexual contact and needle sticks in the healthcare setting but these modes of transmission have a much lower rate of infection as compared to the other ways of spreading the virus (Lauer 41). Upon entering a newly infected host, HCV infects the liver when the envelope of the virus binds to receptors on the surface of the hepatocytes (Tang and Grisé 53). This causes endocytosis into the cell, which under the current understanding results in the pumping of hydrogen ions into the newly formed vesicle (Tang and Grisé 55). The acidification of this vesicle degrades the envelope and releases the RNA into the cytoplasm of the cell. From here it is translated and replicated creating new virus particles (Tang and Grisé 55).The large majority of people infected with HCV will develop viremia (74-86%), or the presence of virus within the bloodstream, and most of these individuals will go on to present with hepatic inflammation or fibrosis (Lauer 43). This involves swelling of the liver and addition of connective tissue to as a result of the trauma caused by the presence of the virus respectively. However, upon acute infection, individuals do not often present with symptoms, and can go as long as 30 years before showing signs of infection (Lauer 43). For this reason, it has been extremely difficult for researchers to track the history of the disease.

      save all of this until the molecular portion....it's too much for an overview.

    4. HCV is typically spread from person to person by blood to blood contact, where the most common risk factors for contracting the virus are IV drug use and receiving a blood donation before 19

      what disease does it cause? why should we care about this virus?

    5. CV) is a member of the flaviviruses meaning it is composed of an envelope surrounding one continuous segment of RNA that codes for a single protein that is later processed to form all of the proteins needed by the virus (Lauer 42). T

      this is all true but is it really how you want to start discussing this very cool virus?

    1. Hosts that can carry the influenza virus are humans, horses, pigs, along with many avian species4. Many of the common influenza reservoirs that carry human infectious subtypes are either huma

      maybe discuss that MOST influenza type A strains that are dangerous to us are found in birds and pigs (or other animals) and that we are often accidental.

    2. In humans influenza viruses are located in a person’s respiratory tract2. The most common portal of exit is by coughing or sneezing4. Direct contact, fomites, airborne, or transfer of bodily fluids are all modes of transmission for the influenza virus. This virus is easily spread and can be spread over a long period of time4. Adults can spread the virus for 3 to 5 days while children can spread it for up to 7 days4. Influenza enters the human body through the respiratory tract and its ultimate location depends on what kind of influenza it is. Human to human influenza infects the upper respiratory tract while avian influenza infects the lower respiratory tract. Once infected a person develops symptoms such as fever, sore throat, body aches, coughing, headaches, fatigue, along with vomiting and diarrhea5.

      you have a lot of ideas here. Maybe break it up into symptoms, viral entry (RT), timeline of infection, and spread.

    3. In humans influenza viruses are located in a person’s respiratory tract2. The most common portal of exit is by coughing or sneezing4. Direct contact, fomites, airborne, or transfer of bodily fluids are all modes of transmission for the influenza virus. This virus is easily spread and can be spread over a long period of time4. Adults can spread the virus for 3 to 5 days while children can spread it for up to 7 days4.

      ummm...redundant to following paragraph?

    1. Themostcommonmechanismofhigh-levelfluoroquino-loneresistanceisduetomutationinoneormoreofthegenesthatencodetheprimaryandsecondarytargetsofthesedrugs,thetypeIItopoisomerases(gyrA,gyrB,parC,andparE).TheregionwheremutationsariseinthesegenesthatencodefluoroquinoloneresistanceisashortDNAsequenceknownasthequinoloneresistance-deter-miningregion(QRDR)[28,29].MutationsintheQRDRofthesegenes,resultinginaminoacidsubstitutions,alterthetargetproteinstructureandsubsequentlythefluoroquin-olone-bindingaffinityoftheenzyme,leadingtodrugresis-tance[30,31].

      Fluoroquinolone resistance.

    1. The ribosomal protection proteins have homology to elongation factors EF-Tu and EF-G (259, 292). The greatest homology is seen at the N-terminal area, which contains the GTP-binding domain. The Tet(M), Tet(O), and OtrA proteins reduce the susceptibility of ribosomes to the action of tetracyclines. The Streptomyces Otr(A) protein has greatest overall amino acid similarity to elongation factors.

      Resistance to tetracycline

    1. rotein-rich liquid that separates out when blood coagulates, called serum,

      maybe start with serum from previously infected people and then work your way up to the details of how to get serum. what is in this magical elixir?

    1. The role of group G β-hemolytic streptococci (GGS) as significant human pathogens has been firmly established during the past 15 years. These organisms are normal inhabitants of the skin, oropharynx, and gastrointestinal and female genital tracts. Although cutaneous infections and pharyngitis are encountered most often, a wide variety of infections—including potentially life-threatening ones, such as septicemia, endocarditis, meningitis, peritonitis, pneumonitis, empyema, and septic arthritis—have been described.1

      Group G Strep infections, where Group G Strep is naturally found

    1. The measles virus is a spherical, envelope, non-segmented single stranded RNA virus that is member of the Morbillivirus genus and the Paramyxoviridae family. This virus contains approximately 16000 nucleotides and encodes for eight proteins (155). When first entering into the person the virus first comes into contact with the lung tissue where it attacks the immune system and its associated cells. These cells are macrophages and dendritic cells which serve as an early defense and warning system. From the lungs the virus migrate to the lymph nodes which contain B and T cells. The virus contains cell receptors CD26 and CD150 (SLAM) which are help to signal the lymphatic system into action. CD46 is a regulatory molecule found on cells with nucleus in the human body while SLAM can be found on active T and B lymphocytes (155). SLAM is also found on the surface on white blood cells and this functions as the point of entry. The virus then takes some of the host cell’s membrane to make its envelope allowing the virus to hide from the immune system. These infected T and B cells then migrate throughout the body thus infecting the whole body with the measles disease (156).

      Way too much molecular information for a broad overview. Keep this information for later. The only info in this part should be global and broad.

    2. n areas which are densely populated with low vaccination coverage the virus primarily affects infants and young children.

      you have a lot of ideas embedded in each sentence of your paragraph. I suggest you break them into smaller sentences with only one idea per sentence. maybe start with bullet points so you can arrange them easily.

    1. OVERVIEW

      Overall, I'd like you to break down your sentences into single ideas.<br> Reference every sentence that isn't your idea (yes, every sentence). Choose to include those things that are most about the disease and global implications of viral infection.

    1. Fusobacteria necrophorum produces a leukocidin and hemolyses erythrocytes of humans, horses, rabbits, and, much less extensively, sheep and cattle. Certain F necrophorum cells hemagglutinate the erythrocytes of humans, chickens, and pigeons. A bovine isolate of F necrophorum demonstrates phospholipase A and lysophospholipase activity.

      Virulence factors

    1. Metronidazole is reduced to disrupt energy metabolism of anaerobes by hindering the replication, transcription and repair process of DNA results in cell death. Presence of oxygen prevents reduction of metronidazole and so reduces its cytotoxicity.

      Mechanism of metronidazole.

    1. In order to establish infection, the bacteria need to escape the host immune response, and in streptococci, a varied arsenal of bacterial strategies have been described. The M-protein aids in immune evasion by inhibiting phagocytosis and inactivating the complement system.[1] Furthermore, Streptococcus dysgalactiae possesses Protein G, a virulence factor binding circulating immunoglobulins, and thus interfering with the host antibody response.[49] DrsG, a virulence protein abrogating the effect of antimicrobial peptides secreted by human immune cells, is also harboured by a subset of SDSE-strains.[50][51]

      Virulence factors

    1. It is important that testing first be performed to determine that the organism is in the Streptococcus genus. Only group A streptococci and group D enterococci are PYR-positive. Other streptococci are negative; however additional testing, using a pure culture, may be necessary to separate group A streptococci (S. pyogenes) from beta-hemolytic enterococci.

      more on PYR test to differentiate b/t groups of strep

    2. INTERPRETATION OF RESULTS A bright pink or cherry red color will appear within one minute if the test is positive. A negative test is indicated by no color change. The development of an orange, salmon, or yellow color should be interpreted as a negative reaction. Organisms expected to give a positive result: Group A streptococci (Streptococcus pyogenes) Group D enterococci (Enterococcusspp.) Coagulase-negative Staphylococcus spp.: haemolyticus, lugdunensis and schleiferi Citrobacter, Klebsiella, Yersinia, Enterobacter and Serratia spp.

      PYR test (Group C/G negative, Group A and Group D are positive)

    1. Traditionally, streptococci are classified by the use of Lancefield group antigens and by hemolysis on blood agar. Lancefield group antigen does not correlate with the species. Classification by hemolysis is imprecise. The molecular taxonomic studies have improved classification. The beta-hemolytic isolates under Lancefield group A, C, F, and G are subdivided into large and small colony forming groups. The large colony groups possess numerous virulence mechanisms, and are labeled "pyogenic". Large colony group C streptococci are usually resistant to bacitracin. This is the method used by many clinical laboratories from Group A Streptococci (GABHS) in many clinical laboratories. However, some Group C Streptococci (GCS) are susceptible to bacitracin and may result in misidentification if Lancefield serologic typing is not performed. Among the Group G streptococci (GGS), Bacitracin susceptibility has been reported to be as high as 67% (87). Trimethoprim/sulfamethoxazole (SXT) disk testing has been added to improve in the identification. Both GCS and GGS are susceptible and GABHS are resistant. For specific identification, a serogrouping reagent is used. The large colony Lancefield GCS are variably classified into some of several possible species, namely, S. dysgalactiae, S. equisimilis, S. zooepidemicus, and S. equi (36). These species can be differentiated by microbiological and biochemical characteristics. All but S.dysgalactiae commonly cause beta-hemolysis in blood agar. S. equisimilis is the most common GCS to cause infection in humans but may also infect domestic animals. The other species primarily infect animals. Most clinical laboratories do not speciate GCS isolates.

      identification, Lancefied group antigens, hemolysis, serotyping

    2. Most patients reported with GCS and GGS infections have received apenicillin or cephalosporin (often with an aminoglycoside). Small numbers of patients have been treated with other antimicrobial agents (vancomycin, erythromycin, clindamycin, or chloramphenicol). On the basis of in vitro data as well as reported clinical experience, penicillin G is the preferred antibiotic (8, 10, 13, 43, 75, 87, 89). Alternative agents with relatively uniform activity include ampicillin, cefotaxime,imipenem, and vancomycin. In vitro testing should be performed if clindamycin or the macrolides are considered for therapy in light of the recent reports of resistance to these agents.

      treatment

    1. All isolates were susceptible to penicillin and levofloxacin, 6 (26.1%) showed resistance or reduced susceptibility to erythromycin [1 mef(A), 3 erm(TR), 1 mef(A)+erm(TR) and 1 erm(TR)+erm(B)] and 7 (30.4%) were resistant or exhibited reduced susceptibility to tetracycline [2 tet(M), 5 tet(M)+tet(O)]. The prevalence in Argentina was of at least 23 invasive infections by SDSE. A wide genetic diversity was observed. All isolates carried speJ and ssa genes. Similarly to other studies, macrolide resistance (26.1%) was mainly associated to the MLSB phenotype.

      Antibiotic resistance info

    1. selective agar

      Vancomycin and nalidixin in the F. necrophorum selective agar and AVN agar inhibited the growth of most Gram-positive and many Gram-negative bacteria, which made it considerably easier to detect F. necrophorum colonies compared with the SSI anaerobe agar. Unlike the AVN agar and SSI anaerobe agar, β-haemolysis could be detected directly on the F. necrophorum selective agar, which assisted especially the inexperienced in the detection of F. necrophorum.

      Although not examined directly in this study, the detection of F. necrophorum using non-selective agar, such as the SSI anaerobe agar, took more time than on the F. necrophorum selective agar to arrive at a final result.

    1. RECOMMENDED MEDIA For culture: Brain Heart Infusion (BHI) Agar, Chocolate Agar, Brucella with H & K Agar, Cooked Meat Medium, Thioglycollate Broth with Supplements, and complex media containing peptone promotes optimum growth. For selective isolation: LKV Agar or BBE Agar. For maintenance: Cooked Meat Medium, Thioglycollate Broth with Supplements, Brucella Agar with H & K, or Brain Heart Infusion (BHI) Agar. Skim Milk Media may be used for long-term storage at -70 degrees C. INCUBATION Temperature: 35 degrees C. Time: 48 hours. Atmosphere: Anaerobic with 5% CO 2 . pH: Near 7.

      How to culture the bacteria

    2. Catalase-variable. Lipase-negative. Indole-variable. Esculin-hydrolysis-negative. Mannose, Lactose, Fructose, and Glucose production from fermentation positive for F. mortiferum . Mannose production from fermentation positive for F. varium . Mannose, Lactose, Fructose, and Glucose production from fermentation negative for F. necrophorum and F. nucleatum . Metronidazole-sensitive.

      biochemical tests

    1. . The group C antigen is found with several different species and the S. anginous group of bacteria, Table 2, page 67. Group G streptococci: The ß-hemolytic streptococci with group G antigen have not had an official taxonomic name. Some have suggested that these strains be called S. canis but this has not gained approval officially or in practical use. ß-hemolytic streptococci with group G antigen should be reported simply as Lancefield's group G streptococci.

      Group C/G info

    1. Concerns about potential antibiotic tolerance in GCS and GGS and reports of clinical failures in patients with severe infections have led many authors to recommend combination therapy for synergy (aminoglycoside plus a cell wall-active agent) in the initial treatment of these patients (1, 17, 18, 27, 28, 31, 33, 35). Our in vitro findings suggest that among high-risk patients with invasive GCS and GGS infections who cannot be treated with penicillin, tolerance of other antimicrobial agents, including vancomycin, should be closely monitored.

      recommended treatment w/ regards to antibiotic resistance

    2. The majority of GCS and GGS strains demonstrate in vitro susceptibility to penicillins, vancomycin, erythromycin, and cephalosporins (3,30). Antimicrobial tolerance, defined as a minimum bactericidal concentration (MBC) 32 or more times higher than the MIC, among GCS and GGS has been reported for penicillin and other agents (24, 27,29).

      examples of antibiotic susceptibilities and tolerances for group c/g strep

    1. The catalase test (3% hydrogen peroxide) or superoxol (30% hydrogen peroxide) are other rapid tests used in the presumptive identification of N gonorrhoeae. A drop of the reagent is placed in the centre of a clean glass slide and the suspect colony is picked with a loop and emulsified in the reagent. N gonorrhoeae will produce a positive reaction with bubbling within 1 s to 2 s. Weak bubbling or bubbling after 3 s indicates a negative reaction (5) (Table ​(Table2).2).

      Catalase test

    2. The inoculated plates should be incubated at 35°C to 37°C in a moist atmosphere enriched with CO2 (3% to 7%) (5). An 18 h to 24 h culture should be used as the inoculum for additional tests. Plates should not be incubated for longer than 48 h because most old cultures would not survive storage conditions.

      Culture conditions

    1. directly to the cell surface or components of surface structures, e.g., pili projected away from the confines of the cell wall. The protein subunits of pili may themselves mediate adherence, or they may carry the adhesins along their lengths or at their tips. The specificity of microbial adherence is often associated with protein-carbohydrate (lectin-like) reactions.

      attachment

    2. These are usually proteins that recognize specific receptors, often sugars or oligosaccharides, expressed at various body sites. The keratinized epithelial cells at the buccal mucosal surface display different receptors from, for example, those present within the salivary pellicle formed on the tooth surface. This provides selectivity for the adherence of different streptococcal species

      Attachment

    1. Usually group C pharyngitis affects an older population, particularly teenagers and young adults. Several studies have demonstrated that group C streptococci are a relatively common cause of acute pharyngitis among college students and among adults seeking care in an emergency room

      epidemiology

    1. Ampicillin is an acceptable alternative, but penicillin is preferred because it has a narrower spectrum of antimicrobial activity and may be less likely to select for resistant organisms.

      penicillin vs ampicillin

    1. Serious group B strep infections in adults can be fatal. On average, 8% of adults with invasive group B strep infections (infections where the bacteria have entered a part of the body that is normally not exposed to bacteria) die. Risk of death is lower among younger adults, and adults who do not have other medical conditions.

      Mortality rate of GBS

    1. SURVIVAL OUTSIDE HOST: Fusobacteria have been known to persist in soil for up to 18 weeks (16). They survive well in wet soil with high manure content (17), however, studies of aerated fecal slurry showed that the levels of Fusobacterium were below the level of detection after 24 hours (18). In non-aerated fecal slurry, no change in Fusobacterium levels were observed in the first 24 hours, and Fusobacteria were no longer present after 6 days. Survival on BHIA medium exposed to air ranges from six hours to seven days depending on species

      Can survive outside of host.

    1. F. necrophorum contains particulary powerful endotoxic lipopolysaccharides in its cell wall and produces a coagulase enzyme that encourages clot formation. Additionally, it produces a variety of exotoxins, including leukocidin, hemolysin, lipase, and cytoplasmic toxin, all of which likely contribute to its pathogenicity.

      Toxins and mechanism of action

    1. Lemierre's syndrome occurs most often when a bacterial (e.g. Fusobacterium necrophorum) throat infection progresses to the formation of a peritonsillar abscess. Deep in the abscess, anaerobic bacteria can flourish. When the abscess wall ruptures internally, the drainage carrying bacteria seeps through the soft tissue and infects the nearby structures.

      Serious cases where F. necrophorum spread leads to Lemierre's Syndrome

    1. Presumptive diagnosis of gonorrhea is made on the basis of one of the following three criteria:typical gram-negative intracellular diplococci on microscopic examination of a smear of urethral exudate from men or endocervical secretions from women*;growth of a gram-negative, oxidase-positive diplococcus, from the urethra (men) or endocervix (women), on a selective culture medium, and demonstration of typical colonial morphology, positive oxidase reaction, and typical gram- negative morphology;detection of N. gonorrhoeae by a nonculture laboratory test (Antigen detection test (e.g., Gonozyme [Abbott]), direct specimen nucleic acid probe test (e.g., Pace II [GenProbe]), nucleic acid amplification test (e.g., LCR [Abbott]).

      tests for gonorrhea