5,169 Matching Annotations
  1. Feb 2022
    1. robustness

      The ability to withstand rigorous testing and maintain its original condition.

    2. Soft robots

      A subset of the robotics field that primarily aims to mimic body motion of living organisms using soft materials.

    3. actuators

      A machine that causes motion or power (i.e. pushes, pulls, or rotates).

    4. arthropods

      A classification of the animal kingdom that encompasses organisms that have an exoskeleton, a segmented body, and jointed appendages (i.e. insects, crustaceans, arachnids, centipedes).

    5. Mobility

      The ability to move freely and easily

    6. animal locomotion

      A variety of methods that animals use to move from one place to another.

    1. photolithography

      A microfabrication technique that uses photosensitive resin and ultraviolet light to create microscale features and devices.

    2. chromatography

      Chemical analysis technique involving the separation of components in a mixture by passing it through a material in which the components move at different rates.

      [Chromatography basics video] https://www.youtube.com/watch?v=XfSopnqrHOs)

    3. Electroosmotic

      Pertaining to the flow of fluid caused by an applied voltage across a membrane, microchannel, or porous material.

    4. anisotropic

      Possessing a different property depending on the direction of the material.

    5. uniaxial

      Pertaining to a single direction.

    6. laminar

      Characterized by flow in which fluid moves smoothly along a path.

    7. Reynolds number

      A ratio of the internal forces to the viscous forces in a fluid. A low Reynolds number indicates stronger viscous force and smoother (laminar) flow, whereas a high Reynolds number indicates greater internal forces and irregular (turbulent) flow.

    1. neuromorphic

      Describes any large system of integrated circuits that mimic the nervous system.

    2. nociceptors

      A pain receptor that responds to damaging stimuli by sending the "threat" signals to the spinal cord and brain.

    3. nanomeshes

      Inorganic nano-structured two-dimensional material.

    4. organic field-effect transistors

      A three-terminal active organic semiconductor device where the output current is controlled by an electric field generated by the input voltage. These are compact and have lower power consumption.

    5. piezoresistors

      A device that exhibits a change in resistance when it is strained.

    6. pascals

      the standard unit of pressure or stress in the International System of Units (SI), equal to one newton per square meter.

    7. tactile

      connected with the sense of touch

    8. bionic

      having artificial body parts, especially electromechanical ones.

    9. prosthetic

      an artificial body part

  2. Jan 2022
    1. reverse transcription quantitative real-time fluorescence polymerase chain reaction (qRT-PCR)

      Reverse transcription quantitative real-time fluorescence polymerase chain reaction, or qRT-PCR, is a widely used molecular technique to measure RNA levels.

      RNA is first reverse transcribed into complimentary DNA. This complimentary DNA is then used as a template for a fluorescence-tagged amplification reaction to calculate the relative amount of a specific starting transcript.

      The transcript levels are compared between genes of interest, which are all compared to a "housekeeping gene" or a transcript that has the same levels of expression across conditions. This comparison standardizes the levels of overall transcription across samples.

      Thermo Fisher provides an extensive introduction to gene expression measuring technologies here: https://www.thermofisher.com/us/en/home/life-science/pcr/real-time-pcr/real-time-pcr-learning-center/gene-expression-analysis-real-time-pcr-information/introduction-gene-expression.html

  3. Dec 2021
    1. PeVN

      The periventricular nucleus is a thin sheet of neurons located in the hypothalamus. For the purpose of this paper, PeVN can be defined as the part of the hypothalamus that is a major source of dopamine and somatostatin expression.

    2. PaVN

      The paraventricular nucleus is a region of the hypothalamus, considered to be the body's most important autonomic control center. The neurons of the PaVN are involved in controlling stress, metabolism, growth, reproduction, immune, gastrointestinal, renal, and cardiovascular functions. For the purpose of this paper, PaVN can be defined as the part of the hypothalamus that is a major source of dopamine and somatostatin expression.

    1. polar cap

      The polar cap is the region of each pole that is covered in ice.

    2. interannual variability

      Interannual events take place in different years.

      Here, it refers to variations that occur from year to year.

    3. forcings

      Forcings refer to factors that drive changes in the climate.

    4. absorption of sunlight

      Light absorption occurs when light transfers energy to an object.

      Here, sunlight's energy is transferred to ozone in the form of heat.

    5. high-latitude

      High latitudes are approximately 60 degrees from the equator and higher. This includes the polar regions.

    6. dynamical variability

      Dynamical variability refers to naturally occurring changes in the climate from year to year.

      Halogen-induced changes become more apparent when naturally occurring changes are removed from the analysis.

    7. low latitudes

      The low latitudes are approximately between 0 degrees (equator) and 30 degrees.

    8. halocarbons

      Halocarbons are chemicals that contain bonds between carbon and halogen atoms.

      Halogens are a group of elements that includes fluorine, chlorine, bromine, iodine, astatine, and tennessine.

      Halocarbons are highly reactive in the Earth's atmosphere and lead to ozone depletion.

    9. anthropogenic

      Anthropogenic means caused by human activity.

      In this context, humans released chemicals into the atmosphere, and these chemicals produced the hole in the ozone layer.

    10. mid-latitudes

      Latitude is the coordinate that specifies the north-south location on the surface of the Earth and ranges from 0 degrees at the equator to 90 degrees at the North and South Poles.

      Mid(or middle)-latitudes are approximately between 30 degrees and 60 degrees.

    11. total integrated column amount

      The integrated column is a way to quantify how much of a particular gas is found in the Earth's atmosphere.

      For a vertical path, or column, that extends through the atmosphere, the number of gas molecules is measured at each point along the path. Then, the sum total is calculated for the entire path.

      In this case, it is used to measure the amount of ozone in the atmosphere.

    12. ozone

      Ozone is a gaseous molecule composed of 3 oxygen atoms with the chemical formula O\(_{3}\).

      Here, the authors are referring to the layer of ozone in the Earth's atmosphere that filters harmful ultraviolet radiation from the sun.

    1. altithermal

      The altithermal, also known as the Holocene climatic optimum, was a warm period which occurred from around 9,000 to 5,000 years ago.

    2. mean radiating level

      The mean radiating level is the average altitude at which radiation is emitted from Earth out to space.

    3. hot, dry summer of 1980

      In 1980, the United States experienced an intense heat wave that remains among the most destructive natural disasters in American history.

    4. Paleoclimatic

      Paleoclimatology is the study of climate before direct measurements were taken. Analysis of samples from rock, ice, and trees can allow scientists to reconstruct climate patterns from hundreds to thousands of years ago.

    5. σ

      Here, σ refers to standard deviation, a measure of the amount of variation in a dataset.

    6. 5-year smoothed

      Smoothed datasets use approximations that combine points with their surrounding values in order to capture the largest patterns without small variations.

    7. a posteriori

      A posteriori means based on empirical evidence, rather than by theoretical deduction.

    8. correlation coefficient

      The correlation coefficient is a measure of how closely the variation in one quantity is related to the variation in another quantity. This value ranges from 0 to 1, with 0 indicating no correlation and 1 indicating perfect correlation.

    9. forcings

      A radiative forcing is a change in the energy flows in the atmosphere.

    10. solar insolation

      Solar insolation refers to the power per unit area received from the sun.

    11. Mount Agung

      Mount Agung is an active volcano in Bali, Indonesia. Its eruption in 1963 sent debris 10 km into the air and killed over 1,000 people. The volcano experienced several smaller eruptions between 2017 and 2019.

    12. heterogeneous

      Heterogeneous distributions are unevely spread out.

    13. stratospheric

      The stratosphere is the layer of the atmosphere above the troposphere. The stratosphere extends to around 50 km above sea level.

    14. optical thickness

      Optical thickness, or optical depth, is a measure of how much light can be transmitted through a material. The higher the optical thickness, the less light will make it through the substance.

    15. thermocline

      The thermocline is the horizontal layer in a body of water where the change in temperature with depth is greater than the layers above or below. Most sunlight is absorbed by the ocean above the thermocline, and this is also where most of the turbulent mixing by waves occurs.

    16. e-folding time

      e-Folding time is the time interval in which a quantity increases by a factor of e, or about 2.72.

    17. Wisconsin ice age

      The Wisconsin ice age, also known as the Wisconsin glaciation, was a period of colder temperatures and glacier advance in North America. This glaciation occurred between 75,000 and 11,000 years ago.

    18. moist adiabatic limiting lapse rate

      The moist adiabatic lapse rate is the rate at which the temperature of a moist air parcel changes as it rises adiabatically (zero heat transfer).

      Unlike the dry adiabatic lapse rate, the moist rate depends strongly on temperature. This is because cold air can hold less water than warm air, so as the parcel rises, water begins to condense and release heat to the air around it. This means that the moist rate is generally lower than the dry rate.

    19. absolute humidity

      Absolute humidity is the ratio of the mass of water in a parcel of air to the volume of that parcel.

    20. relative humidity

      Relative humidity is the ratio of how much water is in the air to how much water the air can hold at the temperature of measurement.

    21. model sensitivity

      The model sensitivity refers to how much the output changes for a given change in input. Here, we are interested in the amount of warming predicted for a doubling in carbon dioxide concentration.

    22. Mie scattering theory

      Mie scattering theory is a model of light scattering that assumes that the particles scattering the light are spherical. This theory applies best when the particles have similar diameter to the wavelength of the incident light. Scattering in the lower 4,500 m of the atmosphere is well described by these equations.

    23. absorption coefficients

      The absorption coefficient of a substance is how efficiently it absorbs radiation at a given frequency.

    24. radiative transfer equation

      The radiative transfer equation mathematically describes how a beam of radiation responds to absorption, emission, and scattering processes.

    25. flux divergences

      The divergence of a flux is a measure of how much some process flows in or out through a surface. If something is a source of the flow, its divergence will be positive, and if it is a sink, its divergence will be negative.

    26. heat capacity

      Heat capacity is the energy it takes to raise the temperature of a substance by a given amount (e.g., 1 degree). It usually has units of joules per mole per kelvin.

    27. convectively unstable

      Convective stability is the ability of a mass of air to resist vertical motion (convection). When an atmosphere is unstable, air masses have larger vertical movements. In the extreme, this can create turbulence and sometimes severe weather.

    28. latent heat

      Latent heat is heat transfer that is not accompanied by a change in temperature. This occurs when water condenses (releasing heat) or evaporates (absorbing heat).

      This is the mechanism by which sweat cools our bodies, even though the temperature of the water remains the same before and immediately after evaporation.

    29. dry adiabatic value

      An adiabatic process is one that occurs with no heat transfer between a system and its surroundings.

      As an air mass rises or falls adiabatically, its temperature changes with altitude due to the change in pressure. The rate of this change for a dry air mass is the dry adiabatic lapse rate.

    30. troposphere

      The troposphere is the lowest layer of Earth's atmosphere, extending from the surface to 13 km above ground on average. This layer contains most of the mass of the atmosphere and is where most weather phenomena take place.

    31. temperature gradient (lapse rate)

      The lapse rate is the rate at which temperature changes with altitude in the atmosphere.

    32. flux-weighted

      Radiant flux refers to light emitted through a surface and has units of watts per square meter. A spherical object emitting radiation will have a radiant flux that gets smaller as one gets further from the source's center.

    33. Stefan-Boltzmann constant

      The Stefan-Boltzmann constant is a number used in the Stefan-Boltzmann law. This equation relates an object's temperature to the wavelengths of light it emits.

      The constant's value is about 5.67 W / (m^2 K^4).

    34. albedo

      Albedo is the proportion of incoming light that is reflected back into space. This reflected light is in the visible and ultraviolet range, rather than the light emitted by Earth itself which is in the infrared.

      Clouds and snow are responsible for much of the planet's albedo.

    35. greenhouse effect

      The greenhouse effect is the warming of Earth's surface due to the behavior of certain atmospheric gases, called greenhouse gases.

      Greenhouse gases absorb and emit the same wavelengths of light (infrared) that are emitted by the planet's surface. This slows down the loss of heat energy to space.

    36. order of magnitude

      An order of magnitude generally refers to a factor of ten. If two results disagree by an order magnitude or more, they are quite different from each other.

    37. radiative perturbations

      Radiative perturbations are changes to the balance of light energy exchanged between Earth and space.

    38. atmospheric "window"

      The atmospheric window refers to the range of wavelengths of light that are emitted from Earth to space with little absorption by atmospheric gases.

      Radiation in this range allows the Earth to get rid of excess heat energy from the Sun and maintain a constant temperature.

    39. anthropogenic carbon dioxide

      Anthropogenic pollutants are harmful substances released into the environment from human activities.

      Carbon dioxide is one such pollutant, and is released from the burning of fossil fuels, such as coal and gasoline.

    40. parts per million

      If a gas has a concentration in a mixture of one part per million (ppm), there is one particle of that gas for every million particles in the mixture.

    41. Northwest Passage

      The Northwest Passage is the sea route that connects the Atlantic and Pacific Oceans along the northern coast of North America.

      Early European explorers believed the Northwest Passage could allow easy access to Asia, but the waters were too shallow and icy to be navigable.

    42. noise level

      The noise level in a dataset refers to the amount of natural variation that is present.

    43. solar luminosity

      Solar luminosity is a measure of how much energy the Sun emits as light every second.

    44. volcanic aerosols

      Aerosols are small particles of solid and liquid that are suspended in air.

      When volcanoes erupt, they release a large quantity of aerosols. These aerosols can reflect sunlight back into space, cooling the ground below.

  4. Nov 2021
  5. Oct 2021
    1. intron retention

      RNA transcripts have two major components - exons and introns. Exons stay in the transcript that gets made into a protein, whereas introns are cut out, and this is known as splicing.

      Intron retention refers to a transcription event where an intron is kept in the RNA instead of being removed. This process can allow for more diversity of transcripts from the same gene.

      You can visualize the splicing process here: https://www.biointeractive.org/classroom-resources/rna-splicing

    2. lentivirus

      Lentivirus is a type of virus that contains reverse transcriptase - a molecule that transcribes RNA into DNA to integrate into the genome and infect host cells.

      Lentivirus can be used to deliver desired DNA into cells. This lentiviral transduction allows for gene expression of desired sequences in organisms of interest.

      You can watch more about cloning to make the DNA for transduction here: https://www.biointeractive.org/classroom-resources/dna-cloning-plasmids, and you visualize the workflow of lentiviral transduction here: https://www.mirusbio.com/applications/high-titer-virus-production/lentivirus-production#figure1303

    3. RNA interference (RNAi)

      RNAi describes the process in which small RNA molecules target and degrade RNA molecules to block protein expression.

      shRNAs are one type of RNA that is used for RNAi.

      This tutorial provides further exploration of RNAi: https://www.biointeractive.org/classroom-resources/rna-interference

    4. transcription

      The creation of an RNA molecule from DNA.

      The RNA that is transcribed from DNA is commonly referred to as a "transcript".

      Canonically, this RNA is later translated to make protein, as described by gene "expression".

      You can visualize and learn more about transcription here: https://www.biointeractive.org/classroom-resources/dna-transcription-advanced-detail

    5. histone

      Histones are a family of proteins that help organize and compact DNA in the eukaryotic genome. DNA wraps around histones to fit inside the nucleus, like yarn around a spool.

      Here is an illustration of this organization: https://www.genome.gov/sites/default/files/tg/en/illustration/histones.jpg and a video that walks through DNA compaction: https://www.biointeractive.org/classroom-resources/how-dna-packaged

    6. H3 lysine 27 (H3K27) demethylase KDM6B

      The histone proteins have exposed "tails" of peptides that can be modified with additional chemical groups, such as methyl or acetyl molecules. These molecules can alter how the histone interacts with its associated DNA.

      These chemical modifications can be added or removed by specific proteins, such as KDM6B, which removes histone subunit 3 lysine residue 27 methylations.

      You can learn more about histone modifications here: https://www.youtube.com/watch?v=OqRt723t33o

    7. meiotic

      Meiotic is the adjective for meiosis, which is the cell division that gives rise to sex cells.

      You can learn more about meiosis here: https://www.biointeractive.org/classroom-resources/meiosis

    8. RNA sequencing analysis

      RNA sequencing (RNA-seq) is a high performance technique that measures which and how many transcript sequences are present in a given biological sample.

      You can learn more about the technique and its analysis here: https://www.youtube.com/watch?v=tlf6wYJrwKY

    9. chromatin immunoprecipitation (ChIP)

      Chromatin immunoprecipitation, or ChIP, identifies the DNA regions were a protein binds across the genome.

      First, an antibody recognizes and binds a protein of interest in the nucleus. Then the antibody holding onto the protein is isolated and any DNA bound the protein is captured for analyses.

      This article describes ChIP and it's application, with some example data analysis, here: https://www.sigmaaldrich.com/US/en/technical-documents/technical-article/genomics/gene-expression-and-silencing/chromatin-immunoprecipitation-chip

    10. in situ hybridization

      A common technique to visualize nucleotide (DNA or RNA) in cells.

      A chemical or radioactive label is added to a nucleotide sequence that is complimentary to the sequence of interest. When added to the cells, this complimentary nucleotide sequence will bind to and tag the sequence of interest, allowing scientists to visualize the DNA or RNA of interest within the cell.

      You can read more about in situ hybridization methods here: https://www.nature.com/scitable/topicpage/fluorescence-in-situ-hybridization-fish-327/

    11. quantitative PCR (qPCR)

      Quantitative polymerase chain reaction (qPCR) measures RNA or DNA levels for comparison among samples.

      This technique is very similar to qRT-PCR (described in above annotations), but does not always require reverse transcription.

    12. molecular basis

      The authors are hoping to reveal the molecular biology underlying Kdm6b-depletion sex reversal. They will test for the genes that KDM6B can directly bind and activate expression for in developing T.scripta gonads.

    13. ectopic

      Ectopic describes events occurring in locations that do not naturally have such events.

      For example, expression of a brain-specific gene in a toenail would be considered ectopic gene expression.

      Here ectopic describes the presence of aromatase in Kdm6b-depleted gonads at MPT, which produces female sex hormones.

    14. loss-of-function mutants

      A mutation is a change to the structure or sequence of a gene compared to a reference.

      Loss of function mutations cause a gene not to make functional amounts or forms of its protein.

      Here, the shRNA is blocking Kdm6b expression, meaning that there is not enough KDM6B to function normally in the Kdm6b-RNAi embryos.

    15. master regulator

      A master regulator often refers to a protein that initiates the cascade of expression for all genes involved in a specific pathway, such as cell fate and development pathways.

    16. germ cells

      Germ cells are an organism's reproductive cells, or the cells that go on to make gametes, like sperm and eggs.

      Every organism is comprised of somatic cells and germ cells.

    17. seminiferous cords

      Seminiferous cords are one of the earliest male-specific tissues formed as the gonad develops. These cords ultimately develop into tubules which hold sperm.

    18. expression

      Expression refers to the active process of making a protein from a gene.

    19. epigenetic

      Epigenetic describes heritable changes in gene expression, or transcription, that do not alter an organism's DNA sequence.

    20. promoter

      The region of DNA that is required for transcription initiation.

    21. gonad

      Gonad refers the organ that produces an organism's reproductive cells.

      The gonad is the testis in males and is the ovary in females.

    22. phenotypic plasticity

      A phenotype describes the physical properties of an organism that can be observed.

      A genotype defines the genetic composition of an organism, including chromosomes and DNA sequences.

      Together, phenotypic plasticity is the ability of one genotype to produce multiple different phenotypes in an organism.

    23. molecular mechanism

      Now that authors have seen that Kdm6b regulates Dmrt1 activation, they are interested in how the molecules interact in the male sex development pathway.

    24. overexpress

      The opposite of knock-down or RNAi, overexpression describes a technique were an RNA transcript for a particular gene is increased above it's normal biological level.

    1. public health (non-pharmaceutical) interventions

      Public health interventions are everyday actions that the public can take to stop the spread of an infectious disease. As indicated by the word in the parentheses, taking medication or vaccination is not considered a public health intervention.

    1. Hydrometallurgy, a process that uses chemicals such as acids or cyanide to leach metals, generates toxic effluent.
    2. Pyrometallurgy involves heating e-waste to more than 1,000 °C, requiring a lot of energy and releasing toxic gases.
    3. bioleaching

      Using bacteria to leach metals from electronics.

    4. e-waste

      Electronic waste: discarded or no longer used electronic devices.

    1. congenital

      Present from birth

    2. etiology

      Cause of a disease

    3. cortical progenitor cells

      Specialized cells in the outermost regions of the brain that give rise to most of the cells in the central nervous system

    4. proliferative defects

      Limited cell growth and division

  6. Sep 2021
    1. Sham

      placebo

    2. sulpiride

      The dopamine receptor antagonist sulpiride functions by binding to the D2 dopamine receptor to block dopamine from binding.

    3. dopamine receptor antagonists SCH23390

      SCH23390 functions by binding to the D1 dopamine receptor to block dopamine from binding.

    4. 6-hydroxydopamine (6-OHDA)

      a neurotoxic synthetic organic compound used by researchers to selectively destroy the brain's dopaminergic as well as noradrenergic neurons. In this paper, it was used to ablate dopaminergic neurons, so as to stop dopamine synthesis.

    5. sham control

      a control treatment that is similar to the experimental treatment, but omits the key therapeutic element being tested.

    6. single-molecule fluorescence in situ hybridization

      this technique enables measurement of gene expression in single cells by detecting and counting individual RNA molecules.

    7. en passant terminals

      places along the length of an axon, other than the axon terminal, that join with other neurons.

    8. reserve pool of cells

      In a review article on reserve pool neuron transmitter respecification, Dulcis et al. provide a helpful analogy for understanding reserve pools. In this analogy, the role of reserve pools is compared to having two jobs, and following certain physiological stimuli, one of those jobs is relinquished. Dulcis et al. defines reserve pool neurons as "cells that share inputs and outputs with adjacent core pools of neurons but express different neurotransmitters." In one situation, the neurons from both pools could be expressing the same transmitters, but the core neurons also express a secondary transmitter; following the change in circuit activity, the neurons of the reserve pool will stop expressing the transmitter that it has in common with the core pool of neurons. In an alternative scenario, these two pools of neurons could be expressing different neurotransmitters, and the change in circuit activity results in the neurons of the reserve pool acquiring the expression of the transmitter that is already expressed by the core neurons (23).

    9. diurnal

      active during the day; opposite of nocturnal.

    10. BrdU

      BrdU is an analog of the nucleoside thymidine, and would be incorporated into newly synthesized DNA. Since the fundamental requirement for cell proliferation is DNA synthesis, quantifying the incorporation of BrdU following application of anti-BrdU antibodies will therefore enable measurements of cell proliferation.

    11. A13

      The A13 group or A13 dopaminergic cell group consists of dopaminergic neurons residing in a region of the brain called the subthalamic nucleus.

    12. circadian rhythm

      our body's "internal clock" that regulates the sleep–wake cycle and repeats every 24 hours.

    13. vesicular monoamine transporter 2 (VMAT2)

      VMAT2 is the CNS vesicular transporter that packages monoamines, such as dopamine, from the cytosol into synaptic vesicles for their release from the neuron.

    14. anxiogenic

      anxious

    15. neuroplastic changes

      Neuroplastic changes refers to the adjustments that neurons make in response to changes in their environment.

    16. dopaminergic neurons

      Neurons that produce the neurotransmitter dopamine. For mammals, this is the main source of dopamine in the CNS.

    1. nested topology—specialist species tend to interact with subsets of partners of the most generalist species

      Metaphorically, nestedness can be compared to a Russian doll, where the diet of specialist species (smaller dolls) fits within the diet of the more generalist species (larger dolls).

    2. playback

      A recording of a bird's native calls is played to lure the species into an area.

    3. weighted

      A weighted network assigns some form of quantitative value to each connection between two partners (an example is shown below in figure 4). In this case, the value assigned was the frequency of interaction.

    4. Abiotic factors

      Non-living parts of an ecosystem, such as elevation or rainfall

    5. We decomposed this metric into two components: species turnover (βST—the proportion of interactions that are not shared owing to differences in species composition between two networks) and linkage turnover [βOS, also called rewiring—the proportion of interactions unique to a single network despite the occurrence of both partners in both networks (30)

      The authors measured the overall dissimilarity between different locations by two factors:

      species turnover when — two  locations do not share similar interaction patterns because they are inhabited by different species,

      and linkage turnover — when species found in both locations develop different interactions specific to their site

    6. The wider variety of partners used at the larger scale (regional network) corresponds to the “fundamental niche,” whereas the subset of partners found at local scales indicates that local populations have much more restricted “realized niches” (27, 28).

      A species' fundamental niche encompasses all of the possible roles it has in its environment, whereas the realized niches are the actual roles that a species plays in its environment, taking into account competition, predation, and other interactions with neighboring species.

      The video below further explains this: https://www.youtube.com/watch?v=-6COob_bymw

    7. supergeneralist

      A species that interacts with a wide number of species in ecological network. 

    8. well integrated into novel networks,

      ability to establish new interactions with partner species present in the ecosystem

    1. replacement rate

      The replacement rate of 1 means that one case in a completely susceptible population can lead to one secondary case. Assuming that the initial case can be cured and reach full recovery — which is what all of us hope — a rate equal to 1 means that one is infected when another gets well, leading to an unchanged number of cases.

    2. U = 8197, z = –3.4, P < 0.01

      The Mann-Whitney U statistic can be seen as the cumulative result of comparing the randomly drawn values from two populations. z is the standardized value and is dependent on the sizes of the two populations. P is the probability for a null hypothesis to be true.

    3. Mann-Whitney

      The Mann-Whitney U test is a test for a null hypothesis that it is equally possible for a value drawn from a population to be greater or smaller than another from a different population. This test is useful when the distributions of values are unspecified. In this study, one population comprises cities that took action earlier, and the other is for cities that responded later.

    4. P < 0.01

      P is the probability that the null hypothesis is true. The null hypothesis, in this case, is that the total number of cases reported from each province shows no significant linear correlation with the total number of travelers from Wuhan.

    5. r = 0.98

      r is the correlation coefficient for an association between two factors. It can take values between -1 and 1. A correlation coefficient equal to -1 indicates a perfectly inverse linear correlation, meaning that one variable decreases in its value in response to the increase of the other linearly. In contrast, an r equal to 1 indicates a perfect linear positive correlation. An r of zero signifies the nonexistence of an association.

    6. cordon sanitaire

      A cordon sanitaire is a movement restriction of people into or out of a specific region. This measure is taken to stop the rapid spread of an infectious disease.

    7. pathogen

      A pathogen is any tiny organism that causes disease.

    8. (13.0; 7.1-18.8)

      The first number in the parentheses is the mean for the number of reported cases, and the range after the semicolon is the 95%CI.

    9. agent

      Agents are the causes of diseases and injuries, but they are not the sole determinant for the occurrence of a disease. The other two factors are the host (the human who can get the disease) and the environment that brings the agents and the host together.

    1. modal

      Modal refers to the mode, or most frequently occurring value in a distribution.

      Here, modal describes the distribution of particle sizes.

    2. overturning circulation

      Stratospheric overturning circulation refers to the atmospheric "conveyor belt" that moves air from the Earth's equator toward the poles.

      This system carries chemicals and ozone throughout the Earth's atmosphere.

      Read more here: https://news.mit.edu/2017/strength-global-stratospheric-circulation-measured-first-time-0828

    3. greenhouse gases

      Greenhouse gases are gases which trap heat in the atmosphere and are responsible for human-caused global warming.

    4. Montreal Protocol

      The Montreal Protocol is an international agreement to phase out the use and production of substances that deplete the ozone layer. The agreement was finalized in 1987.

      Read more here: https://www.epa.gov/ozone-layer-protection/international-actions-montreal-protocol-substances-deplete-ozone-layer

    5. inline

      Inline refers to the insertion of a smaller computer program into a larger, main code.

      The inline code performs a specific function.

      Here, the inline code generates the aerosol properties needed for the ozone calculation.

    6. suborbital

      Suborbital refers to a path that is less than one full revolution around a body.

      Here, it refers to data that was not obtained by satellite.

    7. austral

      Austral means southern. Here, it relates to the Southern Hemisphere of the Earth.

  7. Aug 2021
    1. Some bacteria produce chemicals that leach metals from electronic scrap

      bioleaching is a term used.

    2. precious metals

      Metallic chemicals of high economic value.

    3. Chromobacterium violaceum

      Batista and Silver Neto describe Chromobacterium violaceum as a soil and water organism with the ability to produce industrially important small molecules and be used as a model of an environmental opportunistic pathogen.

    4. violacein

      Violacein is a pigment that occurs naturally and has antibiotic properties.

    1. His

      The amino acid, histidine

    2. wild-type Rma cyt c

      Natural variant of cytochrome c protein from the natural variant Rhodothermus marinus.

    3. genetically encoded

      The sequence of nucleotides that is translated into proteins

    4. isostere

      Elements that have the same number of electrons in the outermost shell (also known as valence shell) and have similar electronic properties. For example, carbon and silicon are isosteres as they both have four valence electrons.

    5. turnover

      The turnover number of an enzyme, is the number of substrate molecules converted into product by an enzyme molecule in a unit time when the enzyme is fully saturated with substrate.

    6. directed evolution

      IA method of engineering proteins towards a defined property. Process of directed evolution: Directed evolution mimics "real" evolution and is accelerated in the laboratory by focusing on individual genes expressed in fast‐growing microorganisms such as E. coli. Enzyme chosen (known as wild-type) must show at least a minimal desired reactivity. Mutations are randomly or site specifically introduced to the gene of the wild type protein. Then, the library of protein variants is screened for the ones with enhanced reactivity. The improved enzymes are used as parents for the next round of mutation and screening. Additional beneficial mutations are introduced if needed. This can continue for several cycles until a desired and new property of the enzyme is attained.

    7. carbene insertion

      Carbene is a neutral reactive intermediate; a carbene insertion reaction is the insertion of a carbene into a chemical bond.

    8. physiological

      conditions that occur in the natural host organism in contrast to laboratory conditions

    1. phenocopying

      exhibiting a phenotype (a set of features/behaviors) that does not correspond to one's own genotype, but rather is environmentally induced.

    2. photoperiods

      A photoperiod is the daily duration that an organism receives light exposure, i.e., length of day.

    3. interneurons

      Interneurons connect sensory neurons, the nerve cells that convert environmental stimuli into internal electrical impulses, and motor neurons, which transmit signals from the brain to control muscle movements. Therefore, interneurons act as a "middle-man", passing signals from sensory neurons to motor neurons.

    4. dopamine

      Commonly called the "feel-good" chemical because of its role in the brain's reward system, dopamine is a neurotransmitter associated with feelings of pleasure, learning, memory, and motor system functions.

    5. somatostatin

      Also known as growth hormone-inhibiting hormone, somatostatin is a peptide hormone that primarily functions to prevent the unnatural rapid proliferation of cells, the hallmark of tumors. Somatostatin also plays a role in the gastrointestinal system.

    6. Neurotransmitters

      Neurotransmitters are signaling molecules used by the nervous system to transmit messages between neurons.

    1. multiple spatial scales

      Local scales (specific sites) and regional scales (entire regions, like an island or an archipelago)

    2. restoration of native ecosystems

      process of assisting the recovery of an ecosystem that has been degraded, damaged or destroyed

    1. the (basic) case reproduction number (R0)

      The basic reproduction number is the average number of secondary cases that can be produced by one case in a completely susceptible population. \(R_0\) higher than 1 indicates that an epidemic will continue, and \(R_0\) lower than 1 is a sign for the epidemic to end.

    2. epidemiology

      Epidemiology investigates the distribution and determinants of health-related states or events concerning specific populations. The study guides the control of health problems.

    3. etiological agent

      Etiology is the medical study of the causes of disease. An etiological agent refers to the origin identified.

    4. 95%CI

      The confidence interval is a range that is likely to contain the true population parameter with a confidence level specified by the percentage.

      In this case, there is a 95% probability that the confidence interval of 2.54-3.29 contains the average delay of arrival of COVID-19.

    5. coronavirus

      Coronaviruses are a family of viruses. This name comes from the solar corona-like characteristic appearance of these viruses under the electron microscope.

    6. outbreak

      Outbreaks are the occurrence of a more-than-expected number of cases.

    1. aromatase

      Aromatase is an enzyme that produces estrogen, the main female sex hormone.

    2. dimorphic

      Differences in characteristics between males and females of the same species other than the sex cells.

    3. medullary cords

      Medullary describes the inside, and cords refer to the early structures that will become an organism's gonads.

      A critical step in sex development of males is when medullary cord cells differentiate into Sertoli cells. If the cords degenerate, the sex cords will instead develop into an ovary - the female gonad.

    4. morphology

      Morphology is the study of the structure of an organism. This often includes observations about the size or shape of an organism.

      Here the authors describe the Kdm6b-deficient embryo gonads as having a structure that looks like a developing female.

    1. Cause AreasProblems people work on, and concepts related to those problems.Global health and developmentAid and paternalismBurden of diseaseDewormingEconomic growthEducationFamily planningForeign aidForeign aid skepticismGlobal povertyImmigration reformMalariaMass distribution of long-lasting insecticide-treated netsMicronutrient programsResearch into neglected tropical diseasesSmallpox Eradication ProgrammeTobacco controlUniversal basic incomeGlobal Catastrophic Risk (other)AsteroidsBiosecurityCivilizational collapseCuban Missile CrisisClimate changeClimate engineeringConservationDystopiaExistential risks from fundamental physics researchGeomagnetic stormsGreat power conflictHuman extinctionManhattan ProjectNuclear warfareNuclear winterNuclear disarmament movementPandemic preparednessRussell–Einstein ManifestoTerrorismTrinitySupervolcanoWeapon of mass destructionAnimal welfareAnimal product alternativesCorporate cage-free campaignsCultured meatDietary changeFarmed animal welfareFish welfareInvertebrate welfareLogic of the larderMeat-eater problemSpeciesismWelfare biologyWild animal welfareBuilding effective altruismAltruistic motivationBuilding effective altruismCommunityCompetitive debatingConsultancyEffective altruism educationEffective altruism groupsEffective altruism in the mediaEffective altruism messagingEffective altruism outreach in schoolsEvent strategyField buildingFundraisingGlobal outreachMoral advocacyMovement collapseNetwork buildingPublic givingRequest for proposalScalably using labourValue driftValue of movement growthOther causesAnti-aging researchArmed conflictAutonomous weaponCause candidatesCause XCluster headachesCognitive enhancementCOVID-19 pandemicCriminal justice reformElectoral reformGlobal priorities researchInstitutional decision-makingLand use reformLess-discussed causesLife extensionLife sciences researchLocal priorities researchMental healthMeta-scienceMoral circle expansionNear-term AI ethicsResearchRisks from malevolent actorsSpace colonizationGlobal Catastrophic Risk (AI)AI alignmentAI boxingAI ethicsAI forecastingAI governanceAI risksAI safetyAI skepticismAI takeoffAI winterAnthropic captureArtificial intelligenceArtificial sentienceBasic AI driveCapability control methodCollective superintelligenceComprehensive AI ServicesComputation hazardHuman-level artificial intelligenceIndirect normativityInfrastructure profusionInstrumental convergenceIntelligence explosionMalignant AI failure modeMind crimeMotivation selection methodOracle AIOrthogonality thesisPerverse instantiationQuality superintelligenceSovereign AISpeed superintelligenceSuperintelligenceTool AIWhole brain emulation
    2. Other ConceptsConcepts that apply to multiple causes, or the entire project of trying to do more good.Moral PhilosophyAnimal cognitionAnimal sentienceApplied ethicsAstronomical wasteAxiologyClassical utilitarianismCluelessnessConsciousness researchConsequentialismCosmopolitanismDemandingness of moralityDeontologyEthics of existential riskEthics of personal consumptionExcited vs. obligatory altruismFuture of humanityHedonismHedoniumInfinite ethicsIntrinsic value vs. instrumental valueIntrospective hedonismIntuition of neutralityLongtermismMetaethicsMoral offsettingMoral patienthoodMoral uncertaintyMoral weightNaive vs. sophisticated consequentialismNegative utilitarianismNon-wellbeing sources of valueNormative ethicsNormative uncertaintyOther moral theoriesPain and sufferingPatient altruismPerson-affecting viewsPersonal identityPhilosophy of mindPopulation ethicsPrioritarianismSentienceSubjective wellbeingSuffering-focused ethicsUniverse's resourcesUtilitarianismValenceVirtue ethicsWelfarismWellbeingLong-Term Risks and FlourishingAlternative foodAnthropogenic existential riskAnthropic shadowBroad vs. narrow interventionsCompound existential riskDecisive strategic advantageDefense in depthDifferential progressEstimation of existential riskExistential catastropheExistential riskExistential risk factorExistential securityFermi paradoxFlourishing futuresGlobal catastrophic riskGlobal catastrophic biological riskHellish existential catastropheHinge of historyIndirect long-term effectsInstitutions for future generationsLong reflectionLong-term futureNatural existential riskNon-humans and the long-term futureS-riskSingletonSpeeding up developmentState vs. step riskTechnological completion conjectureTime of perils hypothesisTiming of existential risk mitigationTotal existential riskTrajectory changesTransformative developmentTranshumanismUnknown existential riskUnprecedented risksValue lock-inVulnerable world hypothesisWarning shotDecision Theory and RationalityAcausal tradeAlternatives to expected value theoryAltruistic coordinationAltruistic wagerAnthropicsBayesian epistemologyBounded rationalityCause neutralityCause prioritizationCognitive biasCounterfactual reasoningCredal resilienceCrucial considerationDebunking argumentDecision theoryDecision-theoretic uncertaintyDefinition of effective altruismDisentanglement researchDoomsday argumentEpistemic deferenceEpistemologyEvolution heuristicExpected valueFanaticismFermi estimationForecastingGame theoryIdeological Turing testInformation hazardInside vs. outside viewInstrumental vs. epistemic rationalityIntervention evaluationLong-range forecastingMarginal charityMeasuring and comparing valueModel uncertaintyModelsMoral cooperationMoral psychologyMoral tradePrediction marketsPrinciple of epistemic deferencePsychology researchRandomized controlled trialsResearch methodsReversal testRisk aversionScope neglectSimulation argumentStatistical methodsStatus quo biasThinking at the marginUnilateralist's curseValue of informationEconomics and FinanceAdjusted life yearBlockchainCost-benefit analysisDivestmentImpact investingInternational tradeMacroeconomic policyMechanism designMicrofinanceWelfare economicsPolitics, Policy, and CultureBallot initiativeConflict theory vs. mistake theoryCultural evolutionCultural lagCultural persistenceDemocracyElectoral politicsGlobal governanceInternational organizationInternational relationsLawLeadershipMisinformationPeace and conflict studiesPolarityPolicyPolitical polarizationProgress studiesSafeguarding liberal democracySocial and intellectual movementsSpace governanceSystemic changeSurveillanceTotalitarianismEffective GivingCash transfersCertificate of impactCharity evaluationConstraints on effective altruismCost-effectivenessCost-effectiveness analysisDiminishing returnsDonation choiceDonation matchingDonation pledgeDonation writeupDonor lotteriesEffective altruism fundingFunding high-impact for-profitsGiving and happinessImpact assessmentImportanceInterpersonal comparisons of wellbeingInvestingITN frameworkMarket efficiency of philanthropyMarkets for altruismNeglectednessOrg strategyPhilanthropic coordinationPhilanthropic diversificationProblem frameworkRoom for more fundingSocially responsible investingTemporal discountingTiming of philanthropyTractabilityVolunteeringWorkplace activismCareer choiceAcademiaCareer capitalCareer choiceCareer frameworkEarning to giveEffective altruism hiringEntrepreneurshipExpertiseFellowships & internshipsIndependent researchJob satisfactionOperationsPersonal fitPublic interest technologyReplaceabilityResearch careersResearch training programsRole impactSoftware engineeringSupportive conditionsWorking at EA vs. non-EA orgsOtherAtomically precise manufacturingChinaComputational power of the human brainComputroniumCryonicsEuropean UnionExtraterrestrial intelligenceFabianismGene drivesHistoryHistory of philanthropyIndiaInformation securityIterated embryo selectionKidney donationRationality communityPhilippinesPhilosophic RadicalsQueen's Lane Coffee HouseReligionRussiaScientific progressSemiconductorsUnited States politicsUtilitarian SocietyTransparency
    1. Open collaboration is collaboration that is egalitarian (everyone can join, no principled or artificial barriers to participation exist), meritocratic (decisions and status are merit-based rather than imposed) and self-organizing (processes adapt to people rather than people adapt to pre-defined processes).
    1. molecular clock

      The average speed that a genome accumulates changes to the nucleotide sequence also known as mutations.

    2. sequenced

      DNA and RNA are molecules that provide the code for cells to carry out their functions. They are composed of a small number nucleotides and the order of these nucleotides determines function. Sequencing allows us to determine what the order of nucleotides within a DNA or RNA molecule.