• Title
  • The landscape of biomedical research
• Authors
  • Rita González-Márquez,
  • Luca Schmidt,
  • Benjamin M. Schmidt,
  • Philipp Berens
  • Dmitry Kobak
• Date
  • April 11, 2023
• Source
  • https://www.biorxiv.org/content/10.1101/2023.04.10.536208v1.full
• Abstract
  • The number of publications in biomedicine and life sciences
  • has rapidly grown over the last decades,
  • with over 1.5 million papers now published every year.
  • This makes it difficult to
    • keep track of new scientific works and
    • to have an overview of the evolution of the field as a whole.
  • Here we
    • present a 2D atlas of the entire corpus of biomedical literature, and
    • argue that it provides
      • a unique and
      • useful overview
    • of the life sciences research.
  • We base our atlas on the abstract texts of
  • 21 million English articles from the PubMed database.
  • To embed the abstracts into 2D, we use
    • a large language model PubMedBERT, combined with
    • t-SNE tailored to handle samples of our size.
  • We use our atlas to study
    • the emergence of the Covid-19 literature,
    • the evolution of the neuroscience discipline,
    • the uptake of machine learning, and
    • the distribution of gender imbalance in academic authorship.
  • Furthermore, we present an interactive web version of our atlas that
    • allows easy exploration and
    • will enable further insights and facilitate future research.

HGNCID:

GeneName: DICER1 syndrome (pleuropulmonary blastoma familial tumor susceptibility syndrome), PMID (PubMed ID): 29762508, HGNCID: 17098, Inheritance pattern: autosomal-dominant disease, Disease entity: Plueropulomary Blastoma, Mutation: Somatic, Zygosity: heterozygous, Variant: multiple variants, Family information: NA, Case: young children, CasePresentingHPO: N/A, CasePreviousTesting: N/A, Gnomade #: N/A , Mutation type: deletion

Chawla, D. S. (2021). Hundreds of ‘predatory’ journals indexed on leading scholarly database. Nature. https://doi.org/10.1038/d41586-021-00239-0

Helder Nakaya. (2022, January 14). 75 years of research on human diseases in 1 minute https://t.co/1QtdijRTtJ [Tweet]. @helder_nakaya. https://twitter.com/helder_nakaya/status/1482095277813157888

Кофе как риск фактор анемии

Resultados busqueda general Pubmed 19/Ago/2020

0 Pre Prints al respecto

Desde 2009 resalta la importancia de la información en el contexto de la salúd pública e incluso se propone como util para predecir brotes y epidemias.

Baxter, N. MD PhD. (2020, May 20). "RT @enenbee: There are now over 14,000 COVID-19 citations indexed by Pubmed. That's bananas. Use with caution..." Twitter. https://twitter.com/SciBeh/status/1263010114820354048

Following the 9/11 and 7/7 attacks Islamophobia intensified, which can be understood, at the psychological level, as an internal racist defence against overwhelming anxiety."

https://www.ncbi.nlm.nih.gov/pubmed/19795546

"Following the 9/11 and 7/7 attacks Islamophobia intensified, which can be understood, at the psychological level, as an internal racist defence against overwhelming anxiety."

This page is the main page through which the other pages are accessed, and to which they redirect when finished. Some pages have directions to the PubMed Commons pages that in 2013 began facilitating the annotation of articles in the bioscience literature. Sadly, this was stopped in 2018, but comments can be retrieved through the Hypothesis site as detailed on my Laboratory Page.

Methods of augmenting PD-1 blockade against cancer involve concomitant CTLA-4 inhibition among others. Here is a visual representation of common biological pathways and cell types between these genes.

https://www.biovista.com/vizit-research/#!bv_gid=1357fa5ee3b610d1918476e21c7be00c

A visual exploration of Tau protein related post-translational modifications in Alzheimers disease (and other tauopathies). Created with Biovista Vizit.

https://www.biovista.com/vizit-research/#!bv_gid=ba502df811e83f68ff3db71d2f33fff3

An interactive network of bibliographic connections between some central proteins of the circadian clock, along with links to some major model organisms.