331 Matching Annotations
  1. Last 7 days
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    Using AI to listen to all of Earth's Species
    1
    1. stopresetgo 18 Jul 2024

      26:30 Brings up progress traps of this new technology

      26:48

      question How do we shift our (human being's) relationship with the rest of nature

      27:00

      metaphor - interspecies communications - AI can be compared to a new scientific instrument that extends our ability to see - We may discover that humanity is not the center of the universe

      32:54

      Question - Dr Doolittle question - Will we be able to talk to the animals? - Wittgenstein said no - Human Umwelt is different from others - but it may very well happen

      34:54

      species have culture - Marine mammals enact behavior similar to humans

      • Unknown unknowns will likely move to known unknowns and to some known knowns

      36:29

      citizen science bioacoustic projects - audio moth - sound invisible to humans - ultrasonic sound - intrasonic sound - example - Amazonian river turtles have been found to have hundreds of unique vocalizations to call their baby turtles to safety out in the ocean

      41:56

      ocean habitat for whales - they can communicate across the entire ocean of the earth - They tell of a story of a whale in Bermuda can communicate with a whale in Ireland

      43:00

      progress trap - AI for interspecies communications - examples - examples - poachers or eco tourism can misuse

      44:08

      progress trap - AI for interspecies communications - policy

      45:16

      whale protection technology - Kim Davies - University of New Brunswick - aquatic drones - drones triangulate whales - ships must not get near 1,000 km of whales to avoid collision - Canadian government fines are up to 250,000 dollars for violating

      50:35

      environmental regulation - overhaul for the next century - instead of - treatment, we now have the data tools for - prevention

      56:40 - ecological relationship - pollinators and plants have co-evolved

      1:00:26

      AI for interspecies communication - example - human cultural evolution controlling evolution of life on earth

      progress trap - AI applied to interspecies communications question - How do we shift our relationship with the rest of nature? - ESP research objective metaphor - interspecies communication - AI is like a new scientific instrument citizen science bioacoustics - whale communication - span the entire ocean progress trap - AI for interspecies communications - policy progress trap - AI for interspecies communications - examples - poachers - ecotourism whale protection - bioacoustic and drones environmental overhaul - treatment to prevention ecological relationships - pollinators and plants co-evolved interspecies communication - umwelt AI for interspecies communication - example - human cultural evolution controlling evolution of life on earth
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    youtube.com/watch
  3. Jul 2024
  4. www.biorxiv.org www.biorxiv.org
    Exploring the molecular composition of the multipass translocon in its native membrane environment
    1
    1. EMBOpress 02 Jul 2024

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    biorxiv.org/content/10.1101/2023.11.28.569136v1
  5. www.biorxiv.org www.biorxiv.org
    Congress of multiple dimers is needed for cross-phosphorylation of IRE1α and its RNase activity
    1
    1. EMBOpress 02 Jul 2024

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    biorxiv.org/content/10.1101/2023.12.18.572154v1
  6. Jun 2024
  7. www.biorxiv.org www.biorxiv.org
    Translation inhibition efficacy does not determine the Plasmodium berghei liver stage antiplasmodial efficacy of protein synthesis inhibitors
    1
    1. EMBOpress 27 Jun 2024

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    biorxiv.org/content/10.1101/2023.12.07.570699v1
  8. www.biorxiv.org www.biorxiv.org
    The type of DNA damage response after Decitabine treatment depends on the level of DNMT activity
    1
    1. EMBOpress 26 Jun 2024

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    biorxiv.org/content/10.1101/2023.09.02.556017v2
  9. www.biorxiv.org www.biorxiv.org
    Structural analysis of SALL4 zinc-finger domain reveals a link between AT-rich DNA binding and Okihiro syndrome
    1
    1. EMBOpress 05 Jun 2024

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    biorxiv.org/content/10.1101/2022.06.14.495968v1
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    Trim66 paternal deficiency causes intrauterine overgrowth
    1
    1. EMBOpress 04 Jun 2024

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    biorxiv.org/content/10.1101/2024.02.12.579976v1
  11. www.biorxiv.org www.biorxiv.org
    The concerted action of SEPT9 and EPLIN modulates the adhesion and migration of human fibroblasts
    1
    1. EMBOpress 04 Jun 2024

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    biorxiv.org/content/10.1101/2022.08.08.503265v1
  12. May 2024
  13. www.biorxiv.org www.biorxiv.org
    DNA binding site II is required for RAD51 recombinogenic activity in Arabidopsis thaliana
    1
    1. EMBOpress 31 May 2024

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    biorxiv.org/content/10.1101/2024.03.07.583932v1
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    Identification of new drugs to counteract anti-spike IgG-induced hyperinflammation in severe COVID-19
    1
    1. EMBOpress 31 May 2024

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    biorxiv.org/content/10.1101/2022.12.20.521247v1
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    ERLIN1/2 scaffolds bridge TMUB1 and RNF170 and restrict cholesterol esterification to regulate the secretory pathway
    1
    1. EMBOpress 30 May 2024

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    biorxiv.org/content/10.1101/2024.01.17.576039v1
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    K48- and K63-linked ubiquitin chain interactome reveals branch- and length-specific interactors.
    1
    1. EMBOpress 29 May 2024

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    biorxiv.org/content/10.1101/2024.01.08.574586v1
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    IGHMBP2 deletion suppresses translation and activates the integrated stress response
    1
    1. EMBOpress 29 May 2024

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    biorxiv.org/content/10.1101/2023.12.11.571166v2
  18. www.biorxiv.org www.biorxiv.org
    Frataxin Deficiency Drives a Shift from Mitochondrial Metabolism to Glucose Catabolism, Triggering an Inflammatory Phenotype in Microglia
    1
    1. EMBOpress 08 May 2024

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    biorxiv.org/content/10.1101/2023.10.18.562916v1
  19. Apr 2024
  20. www.biorxiv.org www.biorxiv.org
    Integrative DNA methylation analysis of pediatric brain tumors reveals tumor type-specific developmental trajectories and epigenetic signatures of malignancy
    1
    1. EMBOpress 27 Apr 2024

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    biorxiv.org/content/10.1101/2022.03.14.483566v2
  21. www.biorxiv.org www.biorxiv.org
    pADP-ribosylation Regulates the Cytoplasmic Localization, Cleavage and Pro-apoptotic Function of HuR
    1
    1. EMBOpress 25 Apr 2024

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    biorxiv.org/content/10.1101/2023.08.07.552262v1
  22. Mar 2024
  23. www.biorxiv.org www.biorxiv.org
    Circadian Transcriptomic and Epigenomic Remodeling in Response to Lipid Overload and Human Obesity
    1
    1. EMBOpress 09 Mar 2024

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    biorxiv.org/content/10.1101/2021.02.23.432336v4
  24. www.biorxiv.org www.biorxiv.org
    Variable PD-1 glycosylation modulates the activity of immune checkpoint inhibitors
    1
    1. EMBOpress 05 Mar 2024

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    biorxiv.org/content/10.1101/2023.08.25.554811v1
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    Structural and biochemical insights into heterotetramer formation between human oncogenic K-Ras4BG12V and Rgl2, a RalA/B activator
    1
    1. EMBOpress 05 Mar 2024

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    biorxiv.org/content/10.1101/2022.10.10.511529v8
  26. www.biorxiv.org www.biorxiv.org
    The memory of airway epithelium damage in smokers and COPD patients
    1
    1. EMBOpress 05 Mar 2024

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    biorxiv.org/content/10.1101/2021.04.21.439437v3
  27. www.biorxiv.org www.biorxiv.org
    Centriole and transition zone structures in photoreceptor cilia revealed by cryo-electron tomography
    1
    1. EMBOpress 05 Mar 2024

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    biorxiv.org/content/10.1101/2023.10.05.560879v1
  28. www.biorxiv.org www.biorxiv.org
    Micronucleus Is Not a Potent Inducer of cGAS-STING Pathway
    1
    1. EMBOpress 05 Mar 2024

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    biorxiv.org/content/10.1101/2023.10.16.561322v1
  29. www.biorxiv.org www.biorxiv.org
    CLN3 deficiency leads to neurological and metabolic perturbations during early development
    1
    1. EMBOpress 05 Mar 2024

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    biorxiv.org/content/10.1101/2023.03.17.533107v1
  30. www.biorxiv.org www.biorxiv.org
    A nuclear signal in prophase determines centrosome positioning and ensures efficient mitotic spindle assembly
    1
    1. EMBOpress 01 Mar 2024

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    biorxiv.org/content/10.1101/2023.06.14.544905v2
  31. www.biorxiv.org www.biorxiv.org
    The origin, evolution and molecular diversity of the chemokine system
    1
    1. EMBOpress 01 Mar 2024

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    biorxiv.org/content/10.1101/2023.05.17.541135v2
  32. Feb 2024
  33. www.biorxiv.org www.biorxiv.org
    Histology-associated transcriptomic heterogeneity in ovarian folliculogenesis revealed by quantitative single-cell RNA-sequencing for tissue sections with DRaqL
    1
    1. EMBOpress 21 Feb 2024

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    biorxiv.org/content/10.1101/2022.12.14.520513v1
  34. www.biorxiv.org www.biorxiv.org
    CRISPR-Cas9-mediated genome engineering exaggerates genomic deletion at 10q23.31 including the PTEN gene locus mimicking cancer profiles
    1
    1. EMBOpress 03 Feb 2024

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    biorxiv.org/content/10.1101/2023.04.05.535680v1
  35. Jan 2024
  36. www.biorxiv.org www.biorxiv.org
    Proteomic-based stratification of intermediate-risk prostate cancer patients
    1
    1. EMBOpress 26 Jan 2024

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    biorxiv.org/content/10.1101/2023.03.03.530910v1
  37. www.biorxiv.org www.biorxiv.org
    Human RAD52 stimulates the RAD51-mediated homology search
    1
    1. EMBOpress 25 Jan 2024

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    biorxiv.org/content/10.1101/2022.06.27.497340v1
  38. www.biorxiv.org www.biorxiv.org
    The structural basis for deubiquitination by the fingerless USP-type effector TssM
    1
    1. EMBOpress 25 Jan 2024

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    biorxiv.org/content/10.1101/2023.08.01.551441v1
  39. www.biorxiv.org www.biorxiv.org
    Changes in searching behaviour of CSL transcription complexes in Notch active conditions
    1
    1. EMBOpress 23 Jan 2024

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    biorxiv.org/content/10.1101/2023.08.10.552734v2
  40. Dec 2023
  41. www.biorxiv.org www.biorxiv.org
    RIF1 ensures the organization of replication factories upon DNA replicative stress.
    1
    1. EMBOpress 16 Dec 2023

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    biorxiv.org/content/10.1101/669234v3
  42. www.biorxiv.org www.biorxiv.org
    Decline of DNA damage response along with myogenic differentiation
    1
    1. EMBOpress 15 Dec 2023

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    biorxiv.org/content/10.1101/2023.06.27.546688v1
  43. www.biorxiv.org www.biorxiv.org
    Enhancer-driven local 3D chromatin domain folding modulates transcription in human mammary tumor cells
    1
    1. EMBOpress 15 Dec 2023

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    biorxiv.org/content/10.1101/2023.10.17.562690v1
  44. www.biorxiv.org www.biorxiv.org
    Structural analysis shows that the BIR2 domain of E3 ligase XIAP binds across the RIP2 kinase dimer interface
    1
    1. EMBOpress 15 Dec 2023

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    biorxiv.org/content/10.1101/2022.10.14.512215v1
  45. www.biorxiv.org www.biorxiv.org
    Mitochondrial phosphoproteomes are functionally specialized across tissues
    1
    1. EMBOpress 14 Dec 2023

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    biorxiv.org/content/10.1101/2022.03.23.485457v1
  46. www.biorxiv.org www.biorxiv.org
    Enucleation of the C. elegans embryo revealed the mechanism of dynein-dependent spacing between microtubule asters
    1
    1. EMBOpress 12 Dec 2023

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    biorxiv.org/content/10.1101/2023.07.21.549990v1
  47. www.biorxiv.org www.biorxiv.org
    Epithelial lumen development requires differential participation of the vertebrate clathrin light chain isoforms with dominance of CLCa in vivo
    1
    1. EMBOpress 12 Dec 2023

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    biorxiv.org/content/10.1101/2023.04.25.538235v2
  48. www.biorxiv.org www.biorxiv.org
    Identification of FAM53C as a suppressive binding protein of a neurodevelopmental disorders-related kinase DYRK1A
    1
    1. EMBOpress 12 Dec 2023

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    biorxiv.org/content/10.1101/2023.04.21.537794v2
  49. www.biorxiv.org www.biorxiv.org
    Modeling of Aberrant Epithelial Reprogramming in Idiopathic Pulmonary Fibrosis using Human Induced Pluripotent Stem Cell-derived Alveolar Organoids
    1
    1. EMBOpress 12 Dec 2023

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    biorxiv.org/content/10.1101/2022.06.15.496102v1
  50. www.biorxiv.org www.biorxiv.org
    Automated staging of zebrafish embryos with deep learning
    1
    1. EMBOpress 09 Dec 2023

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    biorxiv.org/content/10.1101/2023.01.13.523922v2
  51. www.biorxiv.org www.biorxiv.org
    NRF2 connects Src tyrosine kinase to ferroptosis resistance in glioblastoma
    1
    1. EMBOpress 09 Dec 2023

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    biorxiv.org/content/10.1101/2023.05.08.539792v1
  52. www.biorxiv.org www.biorxiv.org
    MICA: A multi-omics method to predict gene regulatory networks in early human embryos
    1
    1. EMBOpress 09 Dec 2023

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    biorxiv.org/content/10.1101/2023.02.03.527081v2
  53. Nov 2023
  54. www.biorxiv.org www.biorxiv.org
    Expansion microscopy reveals subdomains in C. elegans germ granules
    1
    1. EMBOpress 30 Nov 2023

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    biorxiv.org/content/10.1101/2022.05.29.493872v1
  55. www.biorxiv.org www.biorxiv.org
    Revisiting degron motifs in human AURKA required for its targeting by APC/C-FZR1
    1
    1. EMBOpress 07 Nov 2023

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    biorxiv.org/content/10.1101/2022.01.31.478464v2
  56. Oct 2023
  57. www.biorxiv.org www.biorxiv.org
    High Resolution Kinetic Characterization and Dynamic Mathematical Modeling of the RIG-I Signaling Pathway and the Antiviral Responses
    1
    1. EMBOpress 07 Oct 2023

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    biorxiv.org/content/10.1101/2022.08.05.502818v1
  58. Sep 2023
  59. www.biorxiv.org www.biorxiv.org
    Caspase-4 dimerisation and D289 auto-processing elicits an interleukin-1β converting enzyme
    1
    1. EMBOpress 06 Sep 2023

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    biorxiv.org/content/10.1101/2023.01.05.522955v1
  60. www.biorxiv.org www.biorxiv.org
    Neuroprotective effects of hepatoma-derived growth factor in models of Huntington's disease
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    1. EMBOpress 06 Sep 2023

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    biorxiv.org/content/10.1101/2023.02.23.529222v1
  61. www.biorxiv.org www.biorxiv.org
    Structural evidence for elastic tethers connecting separating chromosomes in crane-fly spermatocytes
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    1. EMBOpress 06 Sep 2023

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    biorxiv.org/content/10.1101/2023.05.28.541924v1
  62. www.biorxiv.org www.biorxiv.org
    A novel antifolate suppresses growth of FPGS-deficient cells and overcomes methotrexate resistance
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    1. EMBOpress 06 Sep 2023

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    biorxiv.org/content/10.1101/2023.02.26.530079v2
  63. www.biorxiv.org www.biorxiv.org
    Estimation of crossbridge-state during cardiomyocyte beating using second harmonic generation
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    1. EMBOpress 01 Sep 2023

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    biorxiv.org/content/10.1101/2022.10.13.512034v1
  64. www.biorxiv.org www.biorxiv.org
    Identification of a novel enhancer essential for Satb1 expression in TH2 cells and activated ILC2s.
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    1. EMBOpress 01 Sep 2023

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    biorxiv.org/content/10.1101/2023.01.03.522551v1
  65. www.biorxiv.org www.biorxiv.org
    Spatial metabolomics for symbiotic marine invertebrates
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    1. EMBOpress 01 Sep 2023

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    biorxiv.org/content/10.1101/2022.10.05.511040v1
  66. www.biorxiv.org www.biorxiv.org
    MAP4K3 inhibits Sirtuin-1 to repress LKB1-AMPK to promote amino acid dependent activation of mTORC1
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    biorxiv.org/content/10.1101/2021.11.08.467702v2
  67. www.biorxiv.org www.biorxiv.org
    Origin and segregation of the human germline
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    1. EMBOpress 01 Sep 2023

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    biorxiv.org/content/10.1101/2022.07.06.498671v1
  68. www.biorxiv.org www.biorxiv.org
    Apolipoprotein E intersects with amyloid-β within neurons
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    biorxiv.org/content/10.1101/2022.12.13.520238v1
  69. www.biorxiv.org www.biorxiv.org
    Distant sequence regions of JBP1 contribute to J-DNA binding
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    1. EMBOpress 01 Sep 2023

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    biorxiv.org/content/10.1101/2023.01.23.525147v1
  70. www.biorxiv.org www.biorxiv.org
    IKBKB reduces huntingtin aggregation by phosphorylating Serine 13 via a non-canonical IKK pathway
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    biorxiv.org/content/10.1101/2022.12.05.519070v1
  71. www.biorxiv.org www.biorxiv.org
    Germinal Centers Convergent Evolution and B cell Recirculation in Human Lymph Nodes
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    1. EMBOpress 01 Sep 2023

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    biorxiv.org/content/10.1101/2022.11.09.463832v9
  72. Aug 2023
  73. www.biorxiv.org www.biorxiv.org
    NLRP3 controls ATM activation in response to DNA damage.
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    biorxiv.org/content/10.1101/2020.05.12.087015v1
  74. www.biorxiv.org www.biorxiv.org
    The C-terminal tail of CSNAP attenuates the CSN complex
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    biorxiv.org/content/10.1101/2022.07.18.500399v1
  75. Jul 2023
  76. www.biorxiv.org www.biorxiv.org
    Comparative membrane proteomics reveals diverse cell regulators concentrated at the nuclear envelope
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    1. EMBOpress 29 Jul 2023

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    biorxiv.org/content/10.1101/2023.02.13.528342v1
  77. www.biorxiv.org www.biorxiv.org
    Characterizing control of memory CD8 T cell differentiation by BTB-ZF transcription factor Zbtb20
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    1. EMBOpress 29 Jul 2023

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    biorxiv.org/content/10.1101/2022.08.22.504726v1
  78. www.biorxiv.org www.biorxiv.org
    Extracellular matrix sensing via modulation of orientational order of integrins and F-actin in focal adhesions
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    1. EMBOpress 27 Jul 2023

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    biorxiv.org/content/10.1101/2022.07.22.501116v2
  79. www.biorxiv.org www.biorxiv.org
    https://biorxiv.org/cgi/content/10.1101/2021.11.16.468777
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    1. EMBOpress 27 Jul 2023

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    biorxiv.org/content/10.1101/2021.11.16.468777v1
  80. www.biorxiv.org www.biorxiv.org
    Differential roles of CTP synthetases CTPS1 and CTPS2 in cell proliferation
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    1. EMBOpress 13 Jul 2023

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    biorxiv.org/content/10.1101/2023.03.29.534741v1
  81. www.biorxiv.org www.biorxiv.org
    The cytochrome b carboxyl-terminal region is necessary for mitochondrial Complex III assembly
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    1. EMBOpress 13 Jul 2023

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    biorxiv.org/content/10.1101/2022.11.25.517933v1
  82. www.biorxiv.org www.biorxiv.org
    arfA antisense RNA regulates MscL excretory activity
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    biorxiv.org/content/10.1101/2022.11.21.517365v1
  83. www.biorxiv.org www.biorxiv.org
    Antibody reliability influences observed mRNA-protein correlations in tumour samples
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    biorxiv.org/content/10.1101/2022.12.23.521733v1
  84. www.biorxiv.org www.biorxiv.org
    N-terminal proteoforms may engage in different protein complexes
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    1. EMBOpress 13 Jul 2023

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    biorxiv.org/content/10.1101/2023.01.17.524352v2
  85. www.biorxiv.org www.biorxiv.org
    PI3P dependent regulation of cell size and autophagy by phosphatidylinositol 5-phosphate 4-kinase
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    1. EMBOpress 13 Jul 2023

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    biorxiv.org/content/10.1101/2022.06.18.496676v2
  86. www.biorxiv.org www.biorxiv.org
    Disulfide stabilization reveals conserved dynamic features between SARS-CoV-1 and SARS-CoV-2 spikes.
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    biorxiv.org/content/10.1101/2022.10.14.512296v1
  87. Jun 2023
  88. www.biorxiv.org www.biorxiv.org
    Accurate genotype-based demultiplexing of single cell RNA sequencing samples from non-human animals
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    1. EMBOpress 29 Jun 2023

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    biorxiv.org/content/10.1101/2022.09.22.508993v1
  89. www.biorxiv.org www.biorxiv.org
    Structure-based design and characterization of Parkin activating mutations
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    1. EMBOpress 28 Jun 2023

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    biorxiv.org/content/10.1101/2022.02.22.481412v1
  90. www.biorxiv.org www.biorxiv.org
    Mitochondrial dysfunction rapidly modulates the abundance and thermal stability of cellular proteins
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    1. EMBOpress 28 Jun 2023

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    biorxiv.org/content/10.1101/2022.10.27.514032v1
  91. www.biorxiv.org www.biorxiv.org
    Upf3a is dispensable for nonsense-mediated mRNA decay in mouse pluripotent and somatic cells
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    1. EMBOpress 28 Jun 2023

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    biorxiv.org/content/10.1101/2022.07.04.495064v2
  92. www.biorxiv.org www.biorxiv.org
    Structural insights into ubiquitin chain cleavage by Legionella ovarian tumor deubiquitinases
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    1. EMBOpress 28 Jun 2023

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    biorxiv.org/content/10.1101/2023.01.02.522462v1
  93. www.biorxiv.org www.biorxiv.org
    The pro-inflammatory response to influenza A virus infection is fueled by endothelial cells
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    1. EMBOpress 28 Jun 2023

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    biorxiv.org/content/10.1101/2022.08.19.504520v1
  94. www.biorxiv.org www.biorxiv.org
    Missense variant interaction scanning reveals a critical role of the FERM-F3 domain for tumor suppressor protein NF2 conformation and function
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    1. EMBOpress 28 Jun 2023

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    biorxiv.org/content/10.1101/2022.12.11.519953v2
  95. May 2023
  96. www.biorxiv.org www.biorxiv.org
    BAZ2A-RNA mediated association with TOP2A and KDM1A represses gene expression in prostate cancer
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    1. EMBOpress 31 May 2023

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    biorxiv.org/content/10.1101/2021.07.15.452487v2
  97. www.biorxiv.org www.biorxiv.org
    Recursive splicing discovery using lariats in total RNA sequencing
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    1. EMBOpress 26 May 2023

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    biorxiv.org/content/10.1101/2022.12.22.521701v1
  98. www.biorxiv.org www.biorxiv.org
    Exploratory Meta-Analysis of Hypoxic Transcriptomes Using a Precise Transcript Reference Sequence Set
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    biorxiv.org/content/10.1101/2022.05.01.489280v2
  99. www.biorxiv.org www.biorxiv.org
    VEGFR3 modulates brain microvessel branching in a mouse model of 22q11.2 deletion syndrome
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    biorxiv.org/content/10.1101/2022.03.16.484566v1
  100. www.biorxiv.org www.biorxiv.org
    Telescoping bimodal latent Dirichlet allocation to identify expression QTLs across tissues
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    biorxiv.org/content/10.1101/2021.10.27.466156v2
  101. www.biorxiv.org www.biorxiv.org
    RAS and PP2A activities converge on epigenetic gene regulation
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    1. EMBOpress 26 May 2023

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    biorxiv.org/content/10.1101/2022.05.11.491459v1
  102. www.biorxiv.org www.biorxiv.org
    Functional substitutions of amino acids that differ between GDF11 and GDF8 impact skeletal development and skeletal muscle.
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    biorxiv.org/content/10.1101/2022.05.09.491247v1
  103. www.biorxiv.org www.biorxiv.org
    Gapless provides combined scaffolding, gap filling and assembly correction with long reads
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    biorxiv.org/content/10.1101/2022.03.08.483466v2
  104. www.biorxiv.org www.biorxiv.org
    Z-Flipon Variants reveal the many roles of Z-DNA and Z-RNA in health and disease
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    1. EMBOpress 24 May 2023

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    biorxiv.org/lookup/doi/10.1101/2023.01.12.523822
  105. www.biorxiv.org www.biorxiv.org
    The value of genotype-specific reference for transcriptome analyses
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    1. EMBOpress 14 May 2023

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    biorxiv.org/content/10.1101/2021.09.14.460213v1
  106. www.biorxiv.org www.biorxiv.org
    Genome-wide CRISPRi screening reveals regulators of Alzheimee's tau pathology shared between exosomal and vesicle-free tau seeds.
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    biorxiv.org/content/10.1101/2022.04.26.489622v1
  107. www.biorxiv.org www.biorxiv.org
    Small non-coding vault RNA1-2 modulate expression of cell membrane proteins through nascent RNA silencing
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    1. EMBOpress 11 May 2023

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    biorxiv.org/content/10.1101/2022.08.12.503724v2
  108. www.biorxiv.org www.biorxiv.org
    LuminoCell: a versatile and affordable luminometer platform for monitoring in-cell luciferase-based reporters
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    1. EMBOpress 11 May 2023

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    biorxiv.org/content/10.1101/2022.01.28.478134v1
  109. Apr 2023
  110. www.biorxiv.org www.biorxiv.org
    Efficient knock-in method enabling lineage tracing in zebrafish
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    1. EMBOpress 12 Apr 2023

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    biorxiv.org/content/10.1101/2022.07.15.500272v1
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    The TUDOR domain of SMN is an H3K79me1 histone mark reader
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    1. EMBOpress 11 Apr 2023

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    biorxiv.org/content/10.1101/2022.10.06.511070v1
  112. www.biorxiv.org www.biorxiv.org
    Preference of CAMSAP3 for microtubules with expanded lattice contributes to stabilization of the minus end
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    biorxiv.org/content/10.1101/2022.08.21.504720v2
  113. www.biorxiv.org www.biorxiv.org
    Analysis of context-specific KRAS-effectors (sub)complexes in Caco-2 cells
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  114. Mar 2023
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    Peroxisomes contribute to intracellular calcium dynamics
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    An extended DNA-free intranuclear compartment organizes centrosomal microtubules in Plasmodium falciparum
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    Non-canonical miRNA-RNA base-pairing impedes tumor suppressor activity of miR-16
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    The ADAM17 sheddase complex regulator iTAP/Frmd8 modulates inflammation, epithelial repair, and tumor growth
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    Stepwise progression of beta-selection during T cell development as revealed by histone deacetylation inhibition
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    Lack of peroxisomal catalase affects heat shock response in C. elegans
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    Lineage Tracing Reveals Fate Bias and Transcriptional Memory in Human B cells
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    Critical roles of ICOS in controlling Foxp3-expressing T follicular cell subsets during early-stage germinal center reactions
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    The human MRS2 magnesium binding domain is a regulatory feedback switch for channel activity.
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    Segregation of pathways leading to pexophagy
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    New algorithms for accurate and efficient de-novo genome assembly from long DNA sequencing reads
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  127. Feb 2023
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    Adenylyl cyclase 9 is auto-stimulated by its isoform-specific carboxyl terminal domain and equipped with paradigm-switching mechanisms.
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    Lung macrophages utilize cathepsin K-dependent phagosomal machinery to degrade intracellular collagen
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    SorCS1 inhibits amyloid-β binding to neurexin and rescues amyloid-β-induced synaptic pathology
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    The GET pathway serves to activate Atg32-mediated mitophagy by ER targeting of the Ppg1-Far complex
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    Human RNA Nm-MTase FTSJ1: new tRNA targets and role in the regulation of brain-specific genes.
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    A genome-wide CRISPR functional survey of the human phagocytosis molecular machinery
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  135. en.wikipedia.org en.wikipedia.org
    William Whewell - Wikipedia
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    Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae
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  137. Jan 2023
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    Structural and functional characterization of TraI from pKM101 reveals basis for DNA processing
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    Membrane cholesterol regulates inhibition and substrate transport by the glycine transporter, GlyT2
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    SMN promotes mitochondrial metabolic maturation during myogenesis by regulating the MYOD-miRNA axis.
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    Epigenetic centromere identity is precisely maintained through DNA replication but is uniquely specified among human cells
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    Identifying novel regulators of placental development using time series transcriptomic data and network analyses
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    De novo discovery of traits co-occurring with chronic obstructive pulmonary disease
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    An isoform-specific function of Cdc42 in regulating mammalian Exo70 during axon formation
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    Comparative analysis of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing
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    A synergistic activation of RARb and RARg nuclear receptors restores cell-types specialization during stem cells differentiation by hijacking RARa-controlled program
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    Nuclear envelope reshaping around the vacuole determines the morphology of the ribosomal DNA
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    Porcine intestinal innate lymphoid cells and lymphocyte spatial context revealed through single-cell RNA sequencing
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    Sibling rivalry among the ZBTB transcription factor family: homo vs. heterodimers
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  150. Dec 2022
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    Stage-specific gene and transcript dynamics in human male germ cells
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    Cdh5-lineage independent origin of dermal lymphatic vessels revealed by temporally restricted lineage tracing
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    Endoplasmic Reticulum membranes are continuously required to maintain mitotic spindle size and forces
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    Genome-wide Profiling of Histone Modifications in Plasmodium falciparum using CUT&RUN.
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    Systematic analysis of ADP-ribose detection reagents and optimisation of sample preparation to detect ADP-ribosylation in vitro and in cells
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    Drosophila pVALIUM10 TRiP RNAi lines cause undesired silencing of Gateway-based transgenes
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  157. Nov 2022
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    Actin binding domain of Rng2 strongly inhibits actin movement on myosin II HMM through structural changes of actin filaments
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    Miro GTPase domains regulate assembly of the mitochondrial motor-adaptor complex
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    Improving the computation efficiency of polygenic risk score modeling: Faster in Julia
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    Structure of mammalian V-ATPase with the TLDc domain protein mEAK7 bound
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    Profiling subcellular localization of nuclear-encoded mitochondrial gene products in zebrafish
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  163. Oct 2022
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    Replication-associated inversions are the dominant form of bacterial chromosome structural variation
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    Contribution of the Golgi apparatus in morphogenesis of a virus induced cytopathic vacuolar system
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    Regulation of Liprin-α phase separation by CASK is disrupted by a mutation in its CaM kinase domain
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    Gain-of-function genetic screens in human cells identify SLC transporters overcoming environmental nutrient restrictions
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    Synthetic evolution of herbicide resistance using a T7 RNAP-based random DNA base editor
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    1. EMBOpress 08 Oct 2022

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    biorxiv.org/content/10.1101/2021.11.30.470689v1
  170. www.biorxiv.org www.biorxiv.org
    Evaluation of CA repeat arrays as targets for MeCP2 function in the brain
    1
    1. EMBOpress 08 Oct 2022

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    biorxiv.org/content/10.1101/2022.04.26.489598v2
  171. Sep 2022
  172. www.biorxiv.org www.biorxiv.org
    Meiotic DNA breaks activate a streamlined phospho-signaling response that largely avoids protein level changes
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    1. EMBOpress 27 Sep 2022

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    biorxiv.org/content/10.1101/2022.02.24.481857v1
  173. www.biorxiv.org www.biorxiv.org
    Human gene function publications that describe wrongly identified nucleotide sequence reagents are unacceptably frequent within the genetics literature
    1
    1. EMBOpress 13 Sep 2022

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    biorxiv.org/lookup/doi/10.1101/2021.07.29.453321
  174. Aug 2022
  175. www.biorxiv.org www.biorxiv.org
    Decreasing pdzd8-mediated mitochondrial-ER contacts in neurons improves fitness by increasing mitophagy
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    1. EMBOpress 31 Aug 2022

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    biorxiv.org/content/10.1101/2020.11.14.382861v1
  176. www.biorxiv.org www.biorxiv.org
    Islet Gene View - a tool to facilitate islet research
    1
    1. EMBOpress 19 Aug 2022

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    biorxiv.org/content/10.1101/435743v3
  177. www.biorxiv.org www.biorxiv.org
    Resolution of the curse of dimensionality in single-cell RNA sequencing data analysis
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    1. EMBOpress 19 Aug 2022

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    biorxiv.org/content/10.1101/2022.05.02.490246v1
  178. www.biorxiv.org www.biorxiv.org
    CFTR modulator response measurements in subjects with cystic fibrosis using 2D differentiated nasal epithelia converted into spheroids
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    1. EMBOpress 18 Aug 2022

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    biorxiv.org/content/10.1101/2021.07.20.453105v2
  179. www.biorxiv.org www.biorxiv.org
    A minimal hepatocyte growth factor mimic acting as a powerful agonist of the MET receptor tyrosine kinase for regeneration of epithelial tissues and organs.
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    1. EMBOpress 17 Aug 2022

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    biorxiv.org/content/10.1101/2020.07.20.212654v3
  180. www.biorxiv.org www.biorxiv.org
    Drosophila insulator proteins exhibit in-vivo liquid-liquid phase separation properties
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    1. EMBOpress 11 Aug 2022

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    biorxiv.org/content/10.1101/2022.05.27.493687v1
  181. www.biorxiv.org www.biorxiv.org
    ScRNA-seq Expression of APOC2 and IFI27 Identifies Four Families of Alveolar Macrophage Superclusters in Cystic Fibrosis and Healthy BALF
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    1. EMBOpress 06 Aug 2022

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    biorxiv.org/content/10.1101/2022.01.30.478325v3
  182. www.biorxiv.org www.biorxiv.org
    ERK2 MAP kinase regulates SUFU binding by multisite phosphorylation of GLI1
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    1. EMBOpress 02 Aug 2022

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    biorxiv.org/content/10.1101/2021.12.22.473898v2
  183. Jul 2022
  184. www.biorxiv.org www.biorxiv.org
    LncRNA RUS shapes the gene expression program towards neurogenesis
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    1. EMBOpress 13 Jul 2022

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    biorxiv.org/content/10.1101/2022.02.17.480853v1
  185. Jun 2022
  186. www.biorxiv.org www.biorxiv.org
    Negative curvature-promoting lipids instruct nuclear ingression of low autophagic potential vacuoles
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    1. EMBOpress 13 Jun 2022

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    biorxiv.org/content/10.1101/2021.06.26.450031v1
  187. www.biorxiv.org www.biorxiv.org
    OXSR1 inhibits inflammasome activation by limiting potassium efflux during mycobacterial infection
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    1. EMBOpress 02 Jun 2022

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    biorxiv.org/content/10.1101/2021.04.21.440692v1
  188. www.biorxiv.org www.biorxiv.org
    Genetic and compound screens uncover factors modulating cancer cell response to indisulam
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    biorxiv.org/content/10.1101/2021.12.20.473451v1
  189. www.biorxiv.org www.biorxiv.org
    Map7D2 and Map7D1 facilitate microtubule stabilization through distinct mechanisms to control cell motility and neurite outgrowth.
    1
    1. EMBOpress 01 Jun 2022

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    biorxiv.org/content/10.1101/2021.10.27.466197v3
  190. May 2022
  191. www.biorxiv.org www.biorxiv.org
    Molecular insights into RNA recognition and gene regulation by the TRIM-NHL protein Mei-P26
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    1. EMBOpress 27 May 2022

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    biorxiv.org/content/10.1101/2021.09.20.461029v1
  192. Apr 2022
  193. www.biorxiv.org www.biorxiv.org
    Tricalbin proteins regulate plasma membrane phospholipid homeostasis
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    1. EMBOpress 30 Apr 2022

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    biorxiv.org/content/10.1101/2021.06.04.447076v1
  194. www.biorxiv.org www.biorxiv.org
    Polycomb Group Ring Finger Protein 6 suppresses Myc-induced lymphomagenesis
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    1. EMBOpress 23 Apr 2022

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    biorxiv.org/content/10.1101/2021.12.02.470967v1
  195. www.biorxiv.org www.biorxiv.org
    Quantitative analysis of nuclear pore complex organization in Schizosaccharomyces pombe
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    1. EMBOpress 23 Apr 2022

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    biorxiv.org/content/10.1101/2021.08.11.455278v1
  196. www.biorxiv.org www.biorxiv.org
    TET2-mediated epigenetic reprogramming of breast cancer cells impairs lysosome biogenesis
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    1. EMBOpress 22 Apr 2022

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    biorxiv.org/content/10.1101/2021.10.27.466063v1
  197. www.biorxiv.org www.biorxiv.org
    https://biorxiv.org/cgi/content/10.1101/2021.10.18.464926
    1
    1. EMBOpress 22 Apr 2022

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    biorxiv.org/content/10.1101/2021.10.18.464926v1
  198. www.biorxiv.org www.biorxiv.org
    Conserved exchange of paralog proteins during neuronal differentiation
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    1. EMBOpress 08 Apr 2022

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    biorxiv.org/content/10.1101/2021.07.22.453347v1
  199. Mar 2022
  200. www.biorxiv.org www.biorxiv.org
    AGO1 regulates major satellite transcripts and H3K9me3 distribution at pericentromeric regions in mESCs
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    1. EMBOpress 23 Mar 2022

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    biorxiv.org/content/10.1101/2021.07.26.453733v2
  201. www.biorxiv.org www.biorxiv.org
    GROWTH-RATE DEPENDENT AND NUTRIENT-SPECIFIC GENE EXPRESSION RESOURCE ALLOCATION IN FISSION YEAST
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    1. EMBOpress 22 Mar 2022

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    biorxiv.org/content/10.1101/2021.03.16.435638v1
  202. www.biorxiv.org www.biorxiv.org
    The expression of essential selenoproteins during zebrafish development requires SECIS binding protein 2-like
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    1. EMBOpress 22 Mar 2022

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    biorxiv.org/content/10.1101/2021.11.01.466845v1
  203. www.biorxiv.org www.biorxiv.org
    Stress-induced tyrosine phosphorylation of RtcB modulates IRE1 activity and signaling outputs.
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    1. EMBOpress 19 Mar 2022

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    biorxiv.org/content/10.1101/2020.03.02.972950v5
  204. www.biorxiv.org www.biorxiv.org
    ETV2 regulates PARP-1 binding protein to induce ER stress-mediated cell death in tuberin-deficient cells
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    1. EMBOpress 19 Mar 2022

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    biorxiv.org/content/10.1101/2021.11.08.467714v1
  205. www.biorxiv.org www.biorxiv.org
    Quantitative Profiling of Adaptation to Cyclin E Overproduction
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    1. EMBOpress 12 Mar 2022

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    biorxiv.org/content/10.1101/2021.07.26.453751v3
  206. www.biorxiv.org www.biorxiv.org
    https://biorxiv.org/cgi/content/10.1101/2021.09.08.459430
    1
    1. EMBOpress 12 Mar 2022

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    biorxiv.org/content/10.1101/2021.09.08.459430v1
  207. www.biorxiv.org www.biorxiv.org
    https://biorxiv.org/cgi/content/10.1101/2021.04.23.440619
    1
    1. EMBOpress 11 Mar 2022

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    biorxiv.org/content/10.1101/2021.04.23.440619v2
  208. www.biorxiv.org www.biorxiv.org
    Structural basis of membrane recognition of Toxoplasma gondii vacuole by Irgb6
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    1. EMBOpress 11 Mar 2022

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    biorxiv.org/content/10.1101/2021.07.01.450801v1
  209. www.biorxiv.org www.biorxiv.org
    Redundant and specific roles of EGFR ligands in the ERK activation waves during collective cell migration of MDCK cells
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    1. EMBOpress 10 Mar 2022

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    biorxiv.org/content/10.1101/2021.05.25.445569v1
  210. www.biorxiv.org www.biorxiv.org
    Nonsense-mediated mRNA decay utilizes complementary mechanisms to suppress mRNA and protein accumulation
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    1. EMBOpress 09 Mar 2022

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    biorxiv.org/content/10.1101/2021.05.24.445486v1
  211. www.biorxiv.org www.biorxiv.org
    Recruitment of Scc2/4 to double strand breaks depends on &#x03B3;H2A and DNA end resection
    1
    1. EMBOpress 08 Mar 2022

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    biorxiv.org/content/10.1101/2021.07.09.451733v1
  212. Feb 2022
  213. www.biorxiv.org www.biorxiv.org
    Refining the domain architecture model of the replication origin firing factor Treslin/TICRR
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    1. EMBOpress 09 Feb 2022

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    biorxiv.org/content/10.1101/2021.07.24.453613v1
  214. www.biorxiv.org www.biorxiv.org
    Small disulfide loops in peptide hormones mediate self-aggregation and secretory granule sorting
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    1. EMBOpress 04 Feb 2022

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    biorxiv.org/content/10.1101/2021.08.20.457087v1
  215. www.biorxiv.org www.biorxiv.org
    Cis-Regulatory Hubs: a Relevant 3D Model to Study the Genetics of Complex Diseases with an Application to Schizophrenia
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    biorxiv.org/content/10.1101/2021.06.22.449467v2
  216. www.biorxiv.org www.biorxiv.org
    Nucleotide Biosynthesis Links Glutathione Metabolism to Ferroptosis Sensitivity
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    1. EMBOpress 03 Feb 2022

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    biorxiv.org/content/10.1101/2021.07.14.452394v1
  217. Jan 2022
  218. www.biorxiv.org www.biorxiv.org
    Rbfox1 is required for myofibril development and maintaining fiber-type specific isoform expression in Drosophila muscles
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    1. EMBOpress 21 Jan 2022

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    biorxiv.org/content/10.1101/2021.05.09.443278v1
  219. www.biorxiv.org www.biorxiv.org
    https://biorxiv.org/cgi/content/10.1101/2021.02.04.429604
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    1. EMBOpress 21 Jan 2022

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    biorxiv.org/content/10.1101/2021.02.04.429604v2
  220. www.biorxiv.org www.biorxiv.org
    Bimodal fibrosis in a novel mouse model of bleomycin-induced usual interstitial pneumonia
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    1. EMBOpress 20 Jan 2022

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    biorxiv.org/content/10.1101/2021.03.18.435059v1
  221. www.biorxiv.org www.biorxiv.org
    Electron Cryo-Tomography Structure of Axonemal Doublet Microtubule from Tetrahymena thermophila
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    1. EMBOpress 20 Jan 2022

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    biorxiv.org/content/10.1101/2021.07.13.452106v1
  222. Dec 2021
  223. www.biorxiv.org www.biorxiv.org
    Loss of SET1/COMPASS methyltransferase activity reduces lifespan and fertility in Caenorhabditis elegans
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    1. EMBOpress 29 Dec 2021

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    biorxiv.org/content/10.1101/2021.06.07.447374v1
  224. www.biorxiv.org www.biorxiv.org
    Artemisinin-independent inhibitory activity of Artemisia sp. infusions against different Plasmodium stages including relapse-causing hypnozoites
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    1. EMBOpress 16 Dec 2021

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    biorxiv.org/content/10.1101/2021.08.10.455849v1
  225. www.biorxiv.org www.biorxiv.org
    Comparative poly(A)+ RNA interactome capture of fission yeast RNA exosome mutants reveals insights into RNA biogenesis
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    1. EMBOpress 15 Dec 2021

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    biorxiv.org/content/10.1101/2020.07.01.181719v3
  226. www.biorxiv.org www.biorxiv.org
    Benchmarking a highly selective USP30 inhibitor for enhancement of mitophagy and pexophagy.
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    1. EMBOpress 15 Dec 2021

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    biorxiv.org/content/10.1101/2021.04.28.441730v1
  227. www.biorxiv.org www.biorxiv.org
    Chromosome length and gene density contribute to micronuclear membrane stability
    1
    1. EMBOpress 02 Dec 2021

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    biorxiv.org/content/10.1101/2021.05.12.443914v1
  228. Nov 2021
  229. deepblue.lib.umich.edu deepblue.lib.umich.edu
    Guide to Social Science Data Preparation and Archiving: Best Practice Throughout the Data Life Cycle (6th Edition)
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    1. mlenc 18 Nov 2021

      "The Guide to Social Science Data Preparation and Archiving is aimed at those engaged in the cycle of research, from applying for a research grant, through the data collection phase, and ultimately to preparation of the data for deposit in a public archive: " from tweet

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  230. www.polygraph.info www.polygraph.info
    Wild Conspiracy Theory Linking Pfizer COVID-19 Vaccine To ‘Lucifer’ Goes Viral
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    1. lucyparfitt16 08 Nov 2021

      Echols, W. (n.d.). Wild Conspiracy Theory Linking Pfizer COVID-19 Vaccine To ‘Lucifer’ Goes Viral. POLYGRAPH.Info. Retrieved November 8, 2021, from https://www.polygraph.info/a/fact-check-pfizer-vaccine-luciferase-newsmax/31546045.html

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  231. journals.sagepub.com journals.sagepub.com
    The Role of Human Fallibility in Psychological Research: A Survey of Mistakes in Data Management - Marton Kovacs, Rink Hoekstra, Balazs Aczel, 2021
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    1. lucyparfitt16 05 Nov 2021

      Kovacs, M., Hoekstra, R., & Aczel, B. (2021). The Role of Human Fallibility in Psychological Research: A Survey of Mistakes in Data Management. Advances in Methods and Practices in Psychological Science, 4(4), 25152459211045930. https://doi.org/10.1177/25152459211045930

      is:article lang:en human error data-management mistakes research workflow life cycle of the data open data open materials pregistration psychology behavioral science research human fallibility data analysis scientific practice
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  232. www.biorxiv.org www.biorxiv.org
    Differential impact of a dyskeratosis congenita mutation in TPP1 on mouse hematopoiesis and germline
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    1. EMBOpress 04 Nov 2021

      Transparent Peer Review

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      PeerReviewed EMBOPress Life Science Alliance cell biology
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  233. www.biorxiv.org www.biorxiv.org
    A multifaceted role of progranulin in regulating amyloid-beta dynamics and responses
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    biorxiv.org/lookup/doi/10.1101/2021.04.12.439509
  234. www.biorxiv.org www.biorxiv.org
    The Th1 cell regulatory circuitry is largely conserved between human and mouse
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    biorxiv.org/lookup/doi/10.1101/2021.01.11.426266