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    1. We conducted a qualitative analysis of user study transcripts and survey responses using a Grounded Theory approach [8]. First, the lead researcher collected a list of participants' behaviors, approaches, reflections on their experience, and feedback about the interface. The researcher then systematically coded this data, revisiting the data multiples times and refining the codes to ensure consistency and coherence. Through this process, high-level themes were identified and organized using affinity diagramming. Once the thematic structure was finalized, the researcher gathered supporting evidence for each theme and synthesized the findings, which were reviewed by the research team to ensure agreement on the results.

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    2. Interviews were video and audio recorded. We transcribed the audio using OpenAI's Whisper automatic speech recognition system and anonymized the transcript before analysis. We analyzed the interview data using thematic analysis [1]. First, two members of the research team independently coded four (25% of collected data) randomly chosen participant data to generate low-level codes. The inter-coder reliability between the coders was 0.88 using Krippendorff's alpha [37]. The two coders then met together to cross-check, resolve coding conflicts, and consolidate the codes into a codebook across two sessions. Using the codebook, the two coders analyzed six randomly selected participant data each. The research team then met, discussed the analysis outcomes, and finalized themes over three sessions.

      sentence describing how analysis was performed on data collected by the authors of this paper

    3. Activity log data, which revealed how participants actually used the interface, echoed the above findings. According to the log data, participants spent most of their reading time (66.31%) with vertical alignment on the second element in structure pairs, followed by alignment on the first element (29.19%), and left-justified alignment (5.13%). Highlighting usage showed a similar preference: 91.13% of time with all chunks highlighted, 8.25% with partial highlighting, and minimal time (0.63%) without highlights.

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    4. In this section, we present findings on how AbstractExplorer supports comparative close reading at scale by integrating quantitative survey responses and log data with qualitative analysis of transcripts and open-ended responses. The qualitative analysis process is described in detail in Appendix H.

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    5. Throughout the two tasks, we also collected detailed interaction logs including counts of user-defined aspects created, duration of highlighting usage, and time allocation across the three possible alignment options.

      sentence describing how analysis was performed on data collected by the authors of this paper

    6. Both gaze data and the semi-structured interviews revealed that lower NFC participants were more willing to be guided by the three features and took advantage of them consciously.

      sentence describing how analysis was performed on data collected by the authors of this paper

    7. Using a two-tailed Mann-Whitney U Test, we found that participants who reported their lowest perceived cognitive load when all three features were enabled had significantly lower NFC than participants who reported their lowest cognitive load level when skimming with no features enabled—in the baseline interface (p=0.03).

      sentence describing how analysis was performed on data collected by the authors of this paper

    8. For simplicity of analysis, we denote participants with NFC scores above the overall participants' median NFC of 5.42 (IQR = 0.583) as higher NFC, and lower NFC otherwise.

      sentence describing how analysis was performed on data collected by the authors of this paper

    9. To contrast participants' gaze patterns in each condition, we used a Tobii Pro Spark eye-tracker placed below the desktop monitor used by all subjects; Tobii Pro Lab software recorded each participant's gaze over time in each condition.

      sentence describing how analysis was performed on data collected by the authors of this paper

    10. We collected 80 sentences from our abstracts dataset labeled by our system as "Methodology/Contribution." Participants viewed the same 80 sentences in each condition—often with a different subset of sentences initially visible due to ordering changes—but only had two minutes to look at them in each condition.

      sentence describing how analysis was performed on data collected by the authors of this paper

    11. After obtaining an expanded set of high-level chunk labels, we assign them to each of the sentence chunks by using LLMs in a multiclass classification few-shot learning task, with the initial labels and assignment as examples (see prompt used in Appendix D.3).

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    12. Then, we segment sentences within each aspect into grammarpreserving chunks (see prompt used in Appendix D.2). This results in grammatically coherent chunks that are the basis of structure patterns. After identifying chunk boundaries, we again prompt an LLM to generate labels for chunks in a human-in-the-loop approach: starting from an initial set of labels for chunk roles, when a new label is generated, a researcher from the research team examines the new label and merges it with existing labels if appropriate, controlling for the total number of labels.

      sentence describing how analysis was performed on data collected by the authors of this paper

    13. We process this data in a three-stage pipeline (Figure 6). In the first stage, Sentence Segmentation and Categorization, abstracts are split into individual sentences using the NLTK package, and each sentence is classified into one of the five pre-defined aspects as listed in Section 4.1.1. Classification is performed by prompting an LLM (see prompt used in Appendix D.1) with the sentence and its full abstract.

      sentence describing how analysis was performed on data collected by the authors of this paper