148 Matching Annotations
  1. Dec 2024
  2. Nov 2024
  3. Oct 2024
  4. Sep 2024
  5. Aug 2024
    1. https://en.wikipedia.org/wiki/Mixedink

      MixedInk was a startup that provided web-based, collaborative writing software enabling large groups of people to create text that expresses a collective opinion, such as a mission statement, editorial, political platform, open letter or product review.

  6. Jul 2024
  7. Jun 2024
  8. May 2024
  9. Apr 2024
  10. Mar 2024
  11. Feb 2024
  12. Jan 2024
  13. Dec 2023
    1. Eine neue französische Studie beschäftigt sich mit einer Folge des dramatischen Rückgangs der Insekt. Mangels bestäubender Insekten befruchten sich Pflanzen selbst. Dadurch werden die nächsten Generationen kleiner und liefern weniger Nektar. Es kommt zu einem Rückkopplungseffekt, weil so noch weniger Insekten überleben. In dem Interview mit der liberation erklärt der Biologe diesen Effekt als Beispiel für eine unkontrollierbare und nicht mehr zurücknehmbare, von Menschen ausgelöste Entwicklung. https://www.liberation.fr/environnement/biodiversite/pollinisation-et-disparition-des-insectes-nous-sommes-dans-une-spirale-incontrolable-20231221_CV6BZLN2WJANLN2A2EFUGCJLZI/

    1. They also express concern that students without the deep and broad background knowledge and fluency that affluent children generally absorb from their homes and communities first need to develop that core knowledge before they can benefit from a collaborative, project-based approach.

      This is an interesting point - can you not profit from PBL if you haven't had the lived experiences of a more privileged studennt?

    2. Research on both inequality across schools and tracking within schools has suggested that students in more affluent schools and top tracks are given the kind of problem-solving education that befits the future managerial class, whereas students in lower tracks and higher-poverty schools are given the kind of rule-following tasks that mirror much of factory and other working-class work.”

      These insights are based on the research of Jean Anyon. She collected data in 5 different schools, that served particular social classes and noted the differences in how students are taught, based on the social class the school served.

    3. When most of our current pedagogical practices were developed more than a century ago, the essential economic purpose of public schools was to produce industrial workers who were fast and reliable when assigned repetitive mechanical or clerical tasks. In this century, deeper-learning proponents argue, the job market requires a very different set of skills, one that our current educational system is not configured to help students develop: the ability to work in teams, to present ideas to a group, to write effectively, to think deeply and analytically about problems, to take information and techniques learned in one context and adapt them to a new and unfamiliar problem or situation.

      Important point - the way that we have traditionally taught are a reflection of a different world. Yes...there has been that little evolution in how we teach!

    4. student-centered learning

      this is a contrast to teacher-centered practices

    5. But students in schools serving mostly low-income children were almost all (91 percent) in classrooms marked by basic, uninteresting teaching.

      Think back to your SL school's SARC report - is you school serving mostly low-income students?

    6. And while the Science authors found instruction to be basic and repetitive even in American schools with a mostly middle-class or upper-middle-class student population, they found that the situation was considerably worse in schools that enrolled a lot of low-income children.

      How do you think this finding impacts other aspects of classroom life - like motivation and classroom management?

    7. Pianta’s researchers found that in almost every school they observed, the instruction students received was repetitive and undemanding, limited mostly to the endless practice of basic skills.

      This is depressing. Do you feel that this is true about the instruction that you observed in your SL placement?

    8. 21. Challenge

      I wonder how this is related to persistance.

  14. Nov 2023
    1. In den Niederlanden wird mit einem Wahlsieg von Parteien gerechnet, die für klimapolitischen Stillstand oder Rückschritt stehen. Die taz beschreibt den Stand der Auseinandersetzungen. Hervorgehoben wird die Stärke der Klimabewegung und die Klimarechtssprechung. Für die meisten Wähler:innen sei Klimapolitik nicht von Verteilungs- und Gerechtigkeitsfragen zu trennen.https://taz.de/Wahlen-in-den-Niederlanden/!5971214/

    1. Roger Hardy erklärt in diesem Artikel über die von ihm in Großbritannien gegründete Organisation Round our Way, dass Arbeiterklassen-Communities von der globalen Erhitzung und ihren Folgen besonders stark betroffen sind und das auch wissen. Nur eine Klimabewegung für "ordinary people" könne das Fundament für einen gesellschaftlichen Konsens über Klimaschutz herstellen. https://www.theguardian.com/environment/commentisfree/2023/nov/21/working-class-people-climate-crisis-policy

    1. 61% der Österreicher:innen sprachen sich in einer von Greenpeace in Auftrag gegebenen Umfrage für ein Verbot von Privatflügen aus, 79% für eine Kerosinsteuer, 70% für ein Verbot von Kurzstreckenflügen, wenn alternativ mit der Bahn gefahren werden kann. https://www.derstandard.de/story/3000000196060/mehrheit-in-oesterreich-fuer-privatjet-verbot-und-kerosinsteuer

    1. Bericht der International Energy Agency zur Reduktion der Methanemissionen bei der Förderung von Öl und Gas. Trotz der Rekordgewinne unternehmen die fossilen Energiefirmen bei weitem nicht genug, um diese Emissionen zu stoppen. Nur 3% der Gewinne des letzten Jahres wären nötig um das Methan, das bei der Öl- und Gasförderung in die Atmosphäre entweicht, um 75% zu reduzieren.

  15. Oct 2023
    1. Here is Alter’s version of the well-known opening of Genesis 21, part of the story of Isaac, the miracle baby of 90-year-old Sarah, and her 99-year-old husband, Abraham: “And the Lord singled out Sarah.” The word Alter is translating as “singled out” is pakad. The King James, and most others after it, translate it as “visited.” The Jewish Publication Society has it as “remembered.” Others translate it as “kept his word,” “took note of,” “was gracious to,” “was attentive to” or “blessed.” A good literal version, provided by the canny contemporary translator Everett Fox, has it as “took account of” — and there is something numerical and even administrative about pakad. (Elsewhere in the Bible, in the context of describing a public census, pakad means “to number”; in modern Hebrew, it is related to the words for “officer,” “clerk” and “roll-call.”) Weaving together its numerical dimensions with a thread of bureaucratic banality, Alter yields the anxious verb “singled out” and with it, reveals new layers of tension in this story.

      translation of pakad, an administrative word literally translated as "took account of" as "took note of"

    1. https://en.wikipedia.org/wiki/Shmita

      During shmita, the land is left to lie fallow and all agricultural activity, including plowing, planting, pruning and harvesting, is forbidden by halakha (Jewish law).

      The sabbath year (shmita; Hebrew: שמיטה, literally "release"), also called the sabbatical year or shǝvi'it (שביעית‎, literally "seventh"), or "Sabbath of The Land", is the seventh year of the seven-year agricultural cycle mandated by the Torah in the Land of Israel and is observed in Judaism.

  16. Sep 2023
    1. Die Biden-Administration hat alle amerikanischen Bundesbehörden angewiesen, bei allen Projekten die Kosten, die durch die globale Erhitzung verursacht werden, mit zu budgetieren. Damit wird eine bisher schon von der Umweltbehörde EPA verwendete Metrik der "social costs of carbon" auf die gesamte Regierungstätigkeit ausgeweitet.Mit einem Budget von ungefähr 600 Milliarden Dollar im Jahr ist die amerikanische Bundesregierung der größte Verbraucher von Gütern und Dienstleistungenn in der Welt. https://www.nytimes.com/2023/09/21/climate/biden-climate-change-economic-cost.html

    1. Al Gore hat bei einem Event den New York Times gesagt, dass die Fossilindustrie versucht, den UN-Dekarbonisierungsprozess zu kapern.. Dazu gehöre die Strategie der Vereinten Arabischen Emirate, sich als Vorkämpferland für erneuerbare Energien darzustellen und tatsächlich die Abhängigkeit von fossilen Energie noch zu vergrößern. https://www.nytimes.com/2023/09/21/climate/al-gore-fossil-fuel.html

  17. Aug 2022
  18. May 2022
    1. DICER1 syndrome encompasses a variety of benign and malignant manifestations including multinodular goitre

      Gene: DICER1 PMCID: PMC8451242 PMID: 34552563 Pathogenic Inheritance Pattern: Autosomal Dominant MultipleDiseaseEntities Disease Entity: DICER1 syndrome, multinodular goitre, cystic nephroma, anaplastic renal sarcoma, Wilms tumour, differentiated thyroid carcinoma, gynandroblastoma, ciliary body medulloepithelioma, embryonal rhabdomyosarcoma, pineoblastoma, pituitary blastoma, kidney cyst, pulmonary cyst, Sertoli-Leydig Cell Tumor. Mutation: Germline MultipleGeneVariants Variant & Clinvar IDs: c.3452_3453del (485534), c.316del (no ClinVar ID), c.171_172insAC (no ClinVar ID), c.3434del (no ClinVar ID), c.988C>T (933007), c.5388dup (no ClinVar ID) Zygosity: None provided. Case: At time of operation, the goitre patients living in Denmark were ages 21, 12, 21, 8, 14, and 16. Four underwent total thyroidectomies, and two underwent partial thyroidectomies. The patient originally aged 21 previously had a kidney cyst at age 14 and a pulmonary cyst at an unknown age. The patient aged 14 at time of partial thyroidectomy later manifested a Sertoli-Leydig Cell Tumor at age 15. All six patients were female. CasePresentingHPO: None provided. CasePreviousTesting: thyroidectomy gnomAD: ENSG00000100697.10, https://gnomad.broadinstitute.org/gene/ENSG00000100697 Mutation Type: Frameshift, Nonsense

  19. Dec 2021
  20. Aug 2021
  21. Jul 2021
  22. Mar 2021
    1. Results for individual PALB2 variants were normalized relative to WT-PALB2 and the p.Tyr551ter (p.Y551X) truncating variant on a 1:5 scale with the fold change in GFP-positive cells for WT set at 5.0 and fold change GFP-positive cells for p.Y551X set at 1.0. The p.L24S (c.71T>C), p.L35P (c.104T>C), p.I944N (c.2831T>A), and p.L1070P (c.3209T>C) variants and all protein-truncating frame-shift and deletion variants tested were deficient in HDR activity, with normalized fold change <2.0 (approximately 40% activity) (Fig. 1a).

      AssayResult: 4.4

      AssayResultAssertion: Indeterminate

      StandardErrorMean: 0.09

    2. A total of 84 PALB2 patient-derived missense variants reported in ClinVar, COSMIC, and the PALB2 LOVD database were selected

      HGVS: NM_024675.3:c.1847A>G p.(Asp616Gly)

    1. SUPPLEMENTARY DATA

      AssayResult: 109.2

      AssayResultAssertion: Not reported

      PValue: > 0.9999

      Comment: Exact values reported in Table S3.

    2. To this end, 44 missense variants found in breast cancer patients were identified in the ClinVar database (https://www.ncbi.nlm.nih.gov/clinvar) and/or selected by literature curation based on their frequency of description or amino acid substitution position in the protein (Supplemental Table S1).

      HGVS: NM_024675.3:c.3073G>A p.(Ala1025Thr)

    1. Source Data

      AssayResult: 74.36

      AssayResultAssertion: Not reported

      ReplicateCount: 2

      StandardErrorMean: 1.89

      Comment: Exact values reported in “Source Data” file.

    2. Source Data

      AssayResult: 84.43

      AssayResultAssertion: Not reported

      ReplicateCount: 2

      StandardDeviation: 2.77

      StandardErrorMean: 1.96

      Comment: Exact values reported in “Source Data” file. Discrepancy in “Source Data” file: protein reported as L855P (based on matching values reported in the “Supplementary Data 1” file to values reported in the “Source Data” file.

    3. We, therefore, analyzed the effect of 48 PALB2 VUS (Fig. 2a, blue) and one synthetic missense variant (p.A1025R) (Fig. 2a, purple)29 on PALB2 function in HR.

      HGVS: NM_024675.3:c.2574T>C p.(V858=)

    1. Most Suspected Brugada Syndrome Variants Had (Partial) Loss of Function

      AssayResult: 21

      AssayResultAssertion: Abnormal

      ReplicateCount: 12

      StandardErrorMean: 5.1

      Comment: This variant had partial loss of function of peak current (10-50% of wildtype), therefore it was considered abnormal (in vitro features consistent with Brugada Syndrome Type 1). (Personal communication: A. Glazer)

    2. we selected 73 previously unstudied variants: 63 suspected Brugada syndrome variants and 10 suspected benign variants

      HGVS: NM_198056.2:c.2422C>T p.(Arg808Cys)

  23. Feb 2021
    1. Supplemental material

      AssayResult: 60

      AssayResultAssertion: Normal

      Comment: See Table S2 for details

    2. Supplemental material

      AssayResult: 8.6

      AssayResultAssertion: Abnormal

      Comment: See Table S2 for details

    3. We analysed a total of 82 blood samples derived from 77 individuals (online supplemental table 3). These 77 individuals corresponded either to new index cases suspected to harbour a pathogenic TP53 variant or to relatives of index cases harbouring TP53 variants.

      HGVS: NM_000546.5:c.491_494del p.(Lys164Serfs*5)

    1. By focusing on the condition of the looking glass, Joyce suggests the artist does not start his work with a clean slate. Rather there is considerable baggage he or she must overcome. This baggage might include colonial conditions or biased assumptions. Form and context influence content.

      This seems a bit analogous to Peggy McIntosh's Backpack of White Privilege I was looking at yesterday.

      cf. White Privilege: Unpacking the Invisible Knapsack' and 'Some Notes for Facilitators' | National SEED Project

  24. Jan 2021
    1. Even before Mr. Biden was inaugurated on Wednesday, some Republicans lashed out against his new policy direction.

      Bericht über die ersten Executive Orders Bidens zum Klimanotstand und über die Widerstände dagegen.

  25. Sep 2020
  26. Dec 2019
    1. La loi ne vise donc pas à interdire l’accès à ces postes pour les chrétiens, les juifs, les musulmans.

      Il manque des prémisses à cette conclusion.

      Bien sûr, la loi ne vise pas directement à interdire l’accès aux postes pour les chrétiens, les juifs, les musulmans (mais dans les faits, c'est un peu ce qui arrive, visé ou non).<br> Voyons comment on y arriverait.

      Décortiquons l'argument :

      1. La loi interdit le port des signes religieux au travail.
      2. Les principales religions au Québec n’obligent pas le port de signes religieux au travail.
      3. Si la religion oblige une personne de porter un signe religieux, cette personne n'a pas accès au travail (<mark>IMPLICATION</mark>).
      4. Les principales religions au Québec n’obligent pas le port de signes religieux (l’implication demeure vraie).
      5. La loi n’empêche pas l’accès au travail aux personnes religieuses (conclusion à examiner).
    2. les religions qui empêchent leurs fidèles d’enlever leurs signes religieux

      Dérive suspecte

      Il y a peut-être un glissement ici : on parle d'abord du port des signes religieux (exprimé positivement) et maintenant d’empêcher d'enlever des signes religieux (exprimé négativement).

    3. Ce n’est pas l’islam qui empêche les musulmanes d’enlever leur voile au travail.
      1. Si la constitution canadienne protège les religions, il faut respecter ce que disent les religions.
      2. Si c'est écrit noir sur blanc dans un texte sacré, c'est ce que dit la religion.
      3. La constitution canadienne protège les religions (et ce que disent les religions).
      4. Il n'existe aucun énoncé religieux noir sur blanc qui empêche de porter un signe religieux au travail.
      5. Aussi : il n'existe aucun énoncé religieux noir sur blanc qui empêche de louer un appartement à un homosexuel.

      Énoncés atomiques :

      • C : La constitution canadienne
      • P : Protéger les religions
      • S : Ce que dit un texte sacré
      • E : Empêcher d'enlever un signe religieux au travail
    4. musulmans rigoristes

      Rigoriste?

      J'ignore si le mot sert mal le propos de R. Martineau, mais « rigoriste » qualifie bien quelqu’un qui a un attachement « très strict aux règles morales et religieuses » (donc, en toute conformité avec ce que les religions disent).

      Martineau laisse croire qu’une « conception rigide » est une « conception erronée » – pas nécessairement! On peut avoir une conception très « rigide » mais rigoureusement vraie; on peut aussi avoir une conception complètement spéculative – est-ce le cas des personnes religieuses qui défendent leur droit de religion face à la loi 21?

    5. il ne peut invoquer la liberté de religion pour avoir le droit de refuser un appartement à un gai

      Argument par l'absurde

      Avec un argument par l'absurde, on peut dire n'importe quoi après avoir dit quelque chose d'absurde.

      Refuser l'appartement à un homosexuel est effectivement absurde, puisqu'on doit évidemment louer l'appartement à un homosexuel. De cette contradiction, je peux dire n'importe quoi, comme dire que de ne pas employer une personne religieuse est absurde. Conclusion : il faut employer une personne ouvertement religieuse.

    6. conceptions crispées

      Là encore, il faudrait voir ce que l’expression « conception crispée » représente (rigoriste? fortement attachée aux règles d’une religion?)

    7. textes sacrés

      Lesquels sont justement sujets à interprétation – ce qui ne signifie pas un infini relativisme pour tout un chacun, mais que ce n’est justement pas toujours écrit noir sur blanc.

    8. HORS DE TOUT DOUTE

      C’est bien là le problème.<br> Martineau souhaite une réponse tranchée (comme les positions qu’il <s>défend</s> pitche dans l'espace public) mais les textes sacrés sont justement sujets à une interprétation (une compréhension des textes pas forcément consensuelle), d’où plusieurs branches au sein d’une même religion.

    9. Pourquoi la majorité des musulmanes pratiquantes ne portent pas le voile ? 

      Pourquoi la minorité?

      La question est rhétorique (puisqu'elle n'attend pas de réponse, drop the mic), comme si elle devait rester sans réponse (comme d'une évidence).

      Cela revient simplement à mettre le fardeau sur la minorité, qui doit se justifier de ne pas appartenir à la « majorité ».

      La défense des minorités représente justement le rôle essentiel du poivoir politique…

    10. végane extrémiste

      Parlons extrêmistes

      Le mot « extrémiste » (au lieu de « extrême », au bout du spectre) est assurément employé à des fins polémistes, en connotation avec le terrorisme et, accessoirement, l’islamisme (qui n’a rien à voir avec une défense correcte de l’islam, avec des pratiques violentes et proprement extrêmistes).

  27. Jun 2019
  28. May 2019
    1. The mice were returned to a cage and were kept under a 1 OOW bulb light source to prevent hypothermia. Care was taken to ensure that the eyes are kept covered. The respiratory rate and heart rate were monitored till the mice regained complete consciousness. They were fed ab-limitum post-operatively. Metronidazole (20 mg/kg) was added to the drinking water and the mice were fed this medicated water for 5 days post-operatively. On the th post-operative day, the health of the wound was observed and the surgical clips were removed from the skin
    2. ost-operative care
    1. The organic solution of phospholipid was made in a 1:1 mixture of chloroform and methanol at a concentration of 5 mg/ml. To get a thin and uniform lipid film, lipid was dried down onto the walls of a round bottom flask by rotating for 30 min. in a rotary evaporator fitted with a coo!;ng coil and a thermostatically controlled water bath. The temperature of the water bath was maintained 10 °C above the phase transition temperature of the respective phospholipid. The film was stored under vacuum for 1 2 h to remove the traces of the solvent after flushing with nitrogen. Subsequently, lipid film was dispersed in 30 mM Tris-HCI buffer containing O.IM NaCl, pH 7.0 at a concentration of 1 mg/ml of lipid using glass beads of 0.5 mm-3 mm in diameter. Multilamellar vesicles (ML Vs) were obtained by manual swirling for 2 h at room temperature (Bangham et al., 1965). Nitrogen was flushed into the flask and the vesicle suspension was left overnight at 4 °C. The .following day, maintaining the temperature 10 °C abcve the phase transition temperature of the corresponding phospholipid, MLVs were sonicated in a water bath sonifier (Branson 321 0) for 45 min. to get the small unilamellar vesicles (SUVs) (Huang C, 1969).
    2. Preparation of Lipid Vesicles
    1. for 3 hours at room temperature or OIN at 4 °c. The excess antibody was washed by washing the filters with PBST for 15 minutes with at least three changes. The filters were subsequently incubated in the appropriate dilution of the second antibody for one hour at room temperature. Dilutions of the primary as well as secondary antibody were made in 3 % BSA in PBST. Following incubation with the second antibody, the filters were washed vigorously with PBST for 5 minutes. The washing was repeated 5-6 times. Finally, the filters were washed twice in PBS and colour developed with DAB ( 0.5 mg I ml in PBS ) containing 6 ul I 10 ul of 30 % H2o2. The colour reaction was stopped after 5 -10 minutes by washing the filters with distilled water.
    2. apparatus. At the end of the run, the gel was equilibrated for 15 minutes in the transfer buffer ( 25 mM Tris base,, 192 mM glycine, 20% V/V methanol). Immunoblotting was performed essentially as described by Towbin et al., 1979 ) . The proteins-were blotted on to nitrocellulose Schleicher and Schuell ) for 16 hours in LKB Transphor apparatus. After the completion of electric transfer of proteins, the nitrocellulose paper was washed with PBS 10 mM sodium phosphate buffer, pH 7.4, 0.9 % saline for 10 minutes at room temperature, with gentle rocking to wash off any adhering traces of acrylamide gel. The filter was then stained with a dilute solution of amide black. This was made by diluting 5 fold with water, a solution of 0. 2 % ami do black containing 45 % v;v methanol and 10 % v;v acetic acid. The staining was done for 5 10 seconds and the filter washed immediately with distilled water. The proteins transferred to the gel could be seen at this stage. The lane containing protein molecular weight standards was cut out and . preserved by drying and storage in dark. The filter could be cut into appropriate lanes at this stage. The filter was destained by repeated washing with PBS containing 0.2 % Tween-20 ( PBST ) . After the filter destained completely, it was incubated with 3 % BSA made in PBST for 1 hour at room temperature. During this and in all the subsequent steps, incubation of the filter was performed on a rocker platform to ensure a uniform treatment. The filters were then incubated in the appropriate dilution of the primary antibody
    3. Electrophoretic separation of protein samples was carried out on 12.5 % SDS-PAGE in a discontinuous system as described by Laemmli ( 1970 ). The samples were reduced by boiling for 3 minutes in sample buffer containing J3-mercaptoethanol. The samples were then centrifuged for 5 minutes at 10,000 rpm to pellet down all particulate matter, prior to loading on the gel. Electrophoresis was carried out at 100 volts in a LKB vertical slab gel electrophoresis
    4. Western blot.
    1. The method followed is essentially the same as described by Jin et al. (1992). Overnight bacterial cultures grown in minimal A medium supplemented with 0.4% glycerol and 0.5% Casamino acids with the appropriate antibiotic were subcultured 1:100 in the same medium in a volume of 20 ml (0.2% arabinose was added for induction of the plasmid-borne gene downstream of Para, wherever required) at 37 ̊C. Cultures were induced with 1 mM IPTG at A600=0.3. 1 ml samples were aliquoted at time intervals of 0 sec, 20 sec, 40 sec, 1 min, 1.5 min, 2 min, 2.5 min, 3 min, 3.5 min, 4 min, 4.5 min, 5 min, 5.5 min and 6 min into 1 ml of 0.1 mg/ml ice cold chloramphenicol and the samples were put on ice. After sampling the cultures were incubated at 37 ̊C for 15 min. 0.5 ml of this culture was then taken in duplicate tubes for β-galactosidase assays
    2. RNA polymerase elongation rate measurement
    1. Log-phase yeastcells were collected, washed and suspendedin 10 mM Tris-HCl (pH 7.5) containing 50 mg/ml zymolyase-20T. Cell suspension was incubated at room temperature and absorbance was monitored at 600 nm every10mininterval. Initial absorbance of the cultures at 0 minwas normalized to 100%and the graph was plottedas%decrease in the absorbance with respect to time
    2. Zymolyasedigestion assay
    3. Resultant precipitate was dissolved in 3 N HCl and reprecipitated in methanol:acetic acid (8:1) solution. Following 16 h incubation at room temperature, the precipitate was washed withmethanol:acetic acid (8:1) solution till green colour of the supernatant disappeared.Finally,pellet was washed thrice with methanol and air dried. Driedpellet was resuspended in 0.5 NHCl and total mannan content was quantified with phenol-sulphuric acid carbohydrate estimation method as described earlier.Commercially available purified glucose was used as the standard
    4. Total mannan from 3% NaOH-extractable supernatant of cell wall was precipitated by Benedict’s solution.Reducing sugars(mostly mannan) from alkali-extractable supernatant reactwith copper(II) sulphate present in Benedict’s solution and forms red copper(I) oxide precipitate.Briefly, equal volume of Benedict’s solution was added to 3% NaOH-extractable cell wall supernatant fraction and heated at 99 ̊C for 10 min
    5. Total mannan estimation
    6. Cell wall β-glucan measurement was carried out as describedpreviously with some modifications(Kapteynet.al.,2001). Briefly, cell wall fractions were washed multiple times with 1 N NaCl. Washed cell walls were boiled twice in 50 mM Tris-HCl(pH 7.8) containing 2% SDS, 100 mM Na-EDTA and 40 mM β-mercaptoethanol for 5 min to remove non-covalently linked proteins and other contaminants. SDS-treated cell wall fraction was collected and rinsed thrice with water. For β-glucan isolation, cell wallswere extracted three times, each for 1 h, in 0.5 ml 3% NaOH at 75 ̊C and centrifuged at 1,200 g.All 3% NaOH supernatant fractions were saved for isolation of mannan as described below. 3% NaOH-extractable cell wall pelletwasneutralized twice in 100 mM Tris-HCl (pH 7.5) and once in 10 mM Tris-HCl (pH 7.5) and digested with 5 mg/ml zymolyase-20T in 10 mM Tris-HCl (pH 7.5) for 14-16 h at 37 ̊C. This treatment liberates approximately 90-95% glucose into the supernatant. Total glucan content in the cell wall was measured by estimating glucose from both the solubilised supernatant and zymolyase-20T insoluble pellet fractions with phenol-sulphuric acid carbohydrate estimation method using purified glucose as the standard
    7. Total β-glucan estimation
    8. min. Cells were normalized to equal OD600, resuspendedin 1 ml 50 mM Tris-HCl (pH 7.5) and transferred to 2 ml microcentrifuge tubes. Cells were lysed with glass beadsin a homogenizer (FastPrep®-24,MP Biomedicals)asdescribed earlier.Brokencells were washed from glass beadswith 500 μl Tris-HCl (50 mM, pH 7.5) and pelleteddown at 15,000 g for 10 minto obtainall cell wall and membrane content. Pellet was then boiled for 10 minin 1mlTris-HCl(50mM; pH 7.5)solutioncontaining 2%SDS. SDS-extractable material(mannoproteins)was savedand remaining pellet wasboiled again in 500 μl Tris-HCl(50 mM; pH 7.5)buffer containing 2%SDS. Cell wallwas collectedby centrifugation at 15,000 g for 10 min, washed twice with1 ml waterandresuspendedin 100 μl 67 mM potassium phosphatebuffer. This washed cell wall materialwas used for β-glucan estimation as described below
    9. Yeast cell wall was isolatedas describedpreviously(De Groot et al., 2004). Briefly, cells grown underdifferent environmental conditions were harvested at 5,000 g for 5
    10. Crude cell wall isolation
    11. Cell wall isolation, zymolyasedigestion assay and β-glucan estimation
    1. The quantityand purity of nucleic acids weredetermined by measuring the absorbance at 260 and 280 nmusing automated NanoDrop instrument. The concentration of nucleic acids was calculated by taking 1 OD at 260nm = 50μg/ml for DNA and 40 μg/ml for RNA. The purity of nucleic acids was checked by their A260/A280 ratio
    2. Spectrophotometric estimation of nucleic acids
    1. A single colony of E. coli DH5α strain was inoculated in 10 mL LB medium and incubated at 37°C overnight. Overnight culture was subculturedin 250 mL of LB medium of about 0.1 OD and incubated at 18°Cfor36 htillthe OD600reached approximately0.5. Cultures were centrifuged at 2,500 x gfor 10 min at 4 ̊C and harvested cells were washed gently with 80 ml ice-cold Inoue transformation buffer(Section 2.1.6.2). Cells were collected by centrifugation at 2,500x g for 10 min at 4 ̊C and gently resuspended in 20 mLice-cold Inoue transformation buffer. To this cell suspension, 1.5 ml sterile DMSO was added and swirled gently. The cell suspension waskept on ice for 30min,and 100 μLvolume was aliquoted into pre-chilled sterile microcentrifuge tubes. Cells were immediately snap-frozen in liquid nitrogen and stored at -80°C
    2. Preparation of E. coli DH5α ultracompetent cells
    1. Ip6k1-/-(4 male, 5 female)] were exposed to 4NQO (100 μg/mL) in their drinking water. Mice were allowed free access to drinking water containing the carcinogen, and the water was changed every week.Water bottles containing carcinogen was covered with foil to avoid exposure to light. All the apparatus used for this study and remaining water were decontaminated using 1% sodiumhypochlorite for 30 min. Every week water consumption and weight of the each animal was monitored. Mice displaying any characteristics of weight loss or dehydration before 24 weeks were euthanized and examined for lesions. After 24 weeks, mice were euthanized by CO2inhalation and a complete necropsy was performed. Tissues from the aerodigestive tract (tongue, esophagus, stomach,and duodenum) werefixed in formalin and paraffin-embedded sections were stained with hematoxylin and eosin (H&E) to examine thelesions by light microscopy.Images were acquired using a bright field light microscope (Nikon ECLIPSE Ni, NIS Elements acquisition software, 20x 0.5 N.A. objective). During the pathologicalexamination, the lesions observed in the various tissues were categorized into hyperplasia, dysplasia,and invasive carcinoma. Hyperplasia was defined as an increase in the layers or thickening of the epithelium with hyperkeratinization. Dysplasia was defined as loss of epithelial cell polarity, nuclear pleomorphism and abnormal mitoses confined to the epithelium. Invasive carcinoma was defined as invasion of dysplastic cells or lesions into subepithelial tissues such as submucosa and muscle
    2. Carcinogenesis studies were conducted as described previously for Ip6k2-/-mice (Morrisonet al., 2009). Briefly, the carcinogen, 4NQO stock solution (5 mg/mL) was prepared fresh in propylene glycol every week. Four-week old mice [11 Ip6k1+/+(5 male, 6 female) and 9
    3. Carcinogenesis studies
  29. Sep 2018
    1. In order to protect local interests, and to prevent sectional jealousies, it was found requisite that the three great divisions into which British North America is separated, should be represented in the Upper House on the principle of equality. There are three great sections, having different interests, in this proposed Confederation.
    2. To the Upper House is to be confided the protection of sectional interests ; therefore is it that the three great divisions are there equally represented, for the purpose of defending such interests against the combinations of majorities in the Assembly.
    1. But the very essence of our compact is that the union shall be federal and not legislative. Our Lower Canada friends have agreed to give us representation by population in the Lower House, on the express condition that they shall have equality in the Upper House. On no other condition could we have advanced a step ; and, for my part, I am quite willing they should have it. In maintaining the existing sectional boundaries and handing over the control of local matters to local bodies, we recognize, to a certain extent, a diversity of interests ; and it was quite natural that the protection for those interests, by equality in the Upper Chamber, should be demanded by the less numerous provinces.
  30. Jul 2018
    1. 14

      Step 20:

      Flip the frame over and align the legs with the frame as shown in the graph.

      Step 21:

      Insert the legs into the frame.

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  31. Jul 2017
  32. Apr 2017
    1. Cancer cases expected to soar 40 per cent by 2030

      This article helps me think about the population in 15 years and what kinds of services we'll need to provide.

  33. Mar 2017
  34. Sep 2016
    1. educators could use annotation to build interactive classroom lessons

      It's actually a very good idea to ask students to comment their readings and to share their comments.

      Can be used in traditional or flipped classrooms.