RRID:AB_302613
DOI: 10.1158/1078-0432.CCR-25-2333
Resource: (Abcam Cat# ab1791, RRID:AB_302613)
Curator: @scibot
SciCrunch record: RRID:AB_302613
RRID:AB_302613
DOI: 10.1158/1078-0432.CCR-25-2333
Resource: (Abcam Cat# ab1791, RRID:AB_302613)
Curator: @scibot
SciCrunch record: RRID:AB_302613
plasmid_21915
DOI: 10.1158/1078-0432.CCR-25-2333
Resource: RRID:Addgene_21915
Curator: @scibot
SciCrunch record: RRID:Addgene_21915
RRID:AB_2867348
DOI: 10.1158/1078-0432.CCR-25-2333
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_2867348
RRID:AB_331591
DOI: 10.1158/1078-0432.CCR-25-2333
Resource: (Cell Signaling Technology Cat# 9171, RRID:AB_331591)
Curator: @scibot
SciCrunch record: RRID:AB_331591
RRID:AB_2633083
DOI: 10.1158/1078-0432.CCR-25-2333
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_2633083
RRID:AB_331775
DOI: 10.1158/1078-0432.CCR-25-2333
Resource: (Cell Signaling Technology Cat# 4377, RRID:AB_331775)
Curator: @scibot
SciCrunch record: RRID:AB_331775
RRID:AB_628177
DOI: 10.1158/1078-0432.CCR-25-2333
Resource: (Santa Cruz Biotechnology Cat# sc-7482, RRID:AB_628177)
Curator: @scibot
SciCrunch record: RRID:AB_628177
RRID:AB_10695739
DOI: 10.1158/1078-0432.CCR-25-2333
Resource: (Cell Signaling Technology Cat# 9107, RRID:AB_10695739)
Curator: @scibot
SciCrunch record: RRID:AB_10695739
RRID:AB_2799440
DOI: 10.1158/1078-0432.CCR-25-2333
Resource: (Cell Signaling Technology Cat# 53600, RRID:AB_2799440)
Curator: @scibot
SciCrunch record: RRID:AB_2799440
RRID:AB_2799824
DOI: 10.1158/1078-0432.CCR-25-2333
Resource: (Cell Signaling Technology Cat# 72604, RRID:AB_2799824)
Curator: @scibot
SciCrunch record: RRID:AB_2799824
RRID:AB_2258207
DOI: 10.1158/1078-0432.CCR-25-2333
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_2258207
RRID:AB_2798765
DOI: 10.1158/1078-0432.CCR-25-2333
Resource: (Cell Signaling Technology Cat# 16564, RRID:AB_2798765)
Curator: @scibot
SciCrunch record: RRID:AB_2798765
RRID:AB_10859369
DOI: 10.1158/1078-0432.CCR-25-2333
Resource: (Cell Signaling Technology Cat# 8242, RRID:AB_10859369)
Curator: @scibot
SciCrunch record: RRID:AB_10859369
RRID:AB_476744
DOI: 10.1158/1078-0432.CCR-25-2333
Resource: (Sigma-Aldrich Cat# A5441, RRID:AB_476744)
Curator: @scibot
SciCrunch record: RRID:AB_476744
RRID:AB_2198300
DOI: 10.1158/1078-0432.CCR-25-2333
Resource: (Cell Signaling Technology Cat# 9172, RRID:AB_2198300)
Curator: @scibot
SciCrunch record: RRID:AB_2198300
RRID:SCR_001905
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: R Project for Statistical Computing (RRID:SCR_001905)
Curator: @scibot
SciCrunch record: RRID:SCR_001905
RRID:SCR_002798
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: GraphPad Prism (RRID:SCR_002798)
Curator: @scibot
SciCrunch record: RRID:SCR_002798
RRID:SCR_014782
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: OncoKB (RRID:SCR_014782)
Curator: @scibot
SciCrunch record: RRID:SCR_014782
RRID:SCR_000151
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: GISTIC (RRID:SCR_000151)
Curator: @scibot
SciCrunch record: RRID:SCR_000151
RRID:SCR_006525
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: Picard (RRID:SCR_006525)
Curator: @scibot
SciCrunch record: RRID:SCR_006525
RRID:SCR_026264
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: FACETS (RRID:SCR_026264)
Curator: @scibot
SciCrunch record: RRID:SCR_026264
RRID:SCR_016137
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: Microsoft Excel (RRID:SCR_016137)
Curator: @scibot
SciCrunch record: RRID:SCR_016137
RRID:SCR_022997
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: Manta (RRID:SCR_022997)
Curator: @scibot
SciCrunch record: RRID:SCR_022997
RRID:SCR_012821
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: ANNOVAR (RRID:SCR_012821)
Curator: @scibot
SciCrunch record: RRID:SCR_012821
RRID:SCR_001876
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: GATK (RRID:SCR_001876)
Curator: @scibot
SciCrunch record: RRID:SCR_001876
RRID:SCR_005109
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: Strelka (RRID:SCR_005109)
Curator: @scibot
SciCrunch record: RRID:SCR_005109
RRID:SCR_010910
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: BWA (RRID:SCR_010910)
Curator: @scibot
SciCrunch record: RRID:SCR_010910
RRID:SCR_021917
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: CNVkit (RRID:SCR_021917)
Curator: @scibot
SciCrunch record: RRID:SCR_021917
RRID:SCR_008653
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: Ingenuity Pathway Analysis (RRID:SCR_008653)
Curator: @scibot
SciCrunch record: RRID:SCR_008653
RRID:SCR_016044
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: BMap (RRID:SCR_016044)
Curator: @scibot
SciCrunch record: RRID:SCR_016044
RRID:SCR_015687
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: DESeq2 (RRID:SCR_015687)
Curator: @scibot
SciCrunch record: RRID:SCR_015687
RRID:SCR_010943
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: LIMMA (RRID:SCR_010943)
Curator: @scibot
SciCrunch record: RRID:SCR_010943
RRID:SCR_015058
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: bcl2fastq (RRID:SCR_015058)
Curator: @scibot
SciCrunch record: RRID:SCR_015058
RRID:SCR_003193
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: The Cancer Genome Atlas (RRID:SCR_003193)
Curator: @scibot
SciCrunch record: RRID:SCR_003193
RRID:SCR_002709
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: NCBI database of Genotypes and Phenotypes (RRID:SCR_002709)
Curator: @scibot
SciCrunch record: RRID:SCR_002709
RRID:SCR_014514
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: Genomic Data Commons Data Portal (GDC Data Portal) (RRID:SCR_014514)
Curator: @scibot
SciCrunch record: RRID:SCR_014514
RRID:SCR_018527
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: CustomCDF (RRID:SCR_018527)
Curator: @scibot
SciCrunch record: RRID:SCR_018527
RRID:SCR_004463
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: rna-star (RRID:SCR_004463)
Curator: @scibot
SciCrunch record: RRID:SCR_004463
RRID:SCR_013027
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: RSEM (RRID:SCR_000262)
Curator: @scibot
SciCrunch record: RRID:SCR_000262
RRID:SCR_005012
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: Gene Expression Omnibus (GEO) (RRID:SCR_005012)
Curator: @scibot
SciCrunch record: RRID:SCR_005012
RRID:AB_10544930
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: (Cell Signaling Technology Cat# 8114, RRID:AB_10544930)
Curator: @scibot
SciCrunch record: RRID:AB_10544930
RRID:AB_2336382
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: (MP Bio Cat# 08810133, RRID:AB_2335265)
Curator: @scibot
SciCrunch record: RRID:AB_2335265
RRID:AB_10583042
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_10583042
RRID:AB_2630401
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: (Abcam Cat# ab92513, RRID:AB_2630401)
Curator: @scibot
SciCrunch record: RRID:AB_2630401
RRID:AB_3096390
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_3096390
RRID:SCR_006442
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: Bioconductor (RRID:SCR_006442)
Curator: @scibot
SciCrunch record: RRID:SCR_006442
RRID:AB_2336820
DOI: 10.1158/1078-0432.CCR-25-2186
Resource: (Vector Laboratories Cat# PK-6101, RRID:AB_2336820)
Curator: @scibot
SciCrunch record: RRID:AB_2336820
RRID:AB_2889976
DOI: 10.1158/1078-0432.CCR-25-1796
Resource: (Agilent Cat# SK006, RRID:AB_2889976)
Curator: @scibot
SciCrunch record: RRID:AB_2889976
RRID:SCR_002865
DOI: 10.1158/1078-0432.CCR-25-1796
Resource: SPSS (RRID:SCR_002865)
Curator: @scibot
SciCrunch record: RRID:SCR_002865
RRID:SCR_021712
DOI: 10.1158/1078-0432.CCR-25-1796
Resource: NanoString nCounter Analysis System (RRID:SCR_021712)
Curator: @scibot
SciCrunch record: RRID:SCR_021712
RRID:SCR_001905
DOI: 10.1158/1078-0432.CCR-25-1796
Resource: R Project for Statistical Computing (RRID:SCR_001905)
Curator: @scibot
SciCrunch record: RRID:SCR_001905
RRID:IMSR_JAX:005557
DOI: 10.1158/1078-0432.CCR-25-1749
Resource: (IMSR Cat# JAX_005557,RRID:IMSR_JAX:005557)
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:005557
RRID:IMSR_CRL:236
DOI: 10.1158/1078-0432.CCR-25-1749
Resource: (IMSR Cat# CRL_236,RRID:IMSR_CRL:236)
Curator: @scibot
SciCrunch record: RRID:IMSR_CRL:236
RRID:CVCL_3768
DOI: 10.1158/1078-0432.CCR-25-1749
Resource: (ATCC Cat# CRL-11732, RRID:CVCL_3768)
Curator: @scibot
SciCrunch record: RRID:CVCL_3768
RRID:AB_3697448
DOI: 10.1158/1078-0432.CCR-25-1749
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_3697448
RRID:CVCL_0372
DOI: 10.1158/1078-0432.CCR-25-1749
Resource: (NCBI_Iran Cat# C152, RRID:CVCL_0372)
Curator: @scibot
SciCrunch record: RRID:CVCL_0372
RRID:AB_2920895
DOI: 10.1158/1078-0432.CCR-25-1749
Resource: (Abcam Cat# ab221543, RRID:AB_2920895)
Curator: @scibot
SciCrunch record: RRID:AB_2920895
RRID:AB_2535862
DOI: 10.1158/1078-0432.CCR-25-1749
Resource: (Thermo Fisher Scientific Cat# A-21445, RRID:AB_2535862)
Curator: @scibot
SciCrunch record: RRID:AB_2535862
RRID:CVCL_0465
DOI: 10.1158/1078-0432.CCR-25-1749
Resource: (ATCC Cat# HTB-161, RRID:CVCL_0465)
Curator: @scibot
SciCrunch record: RRID:CVCL_0465
RRID:CVCL_1304
DOI: 10.1158/1078-0432.CCR-25-1749
Resource: (NCI-DTP Cat# IGR-OV1, RRID:CVCL_1304)
Curator: @scibot
SciCrunch record: RRID:CVCL_1304
RRID:CVCL_2199
DOI: 10.1158/1078-0432.CCR-25-1749
Resource: (BCRC Cat# 60034, RRID:CVCL_2199)
Curator: @scibot
SciCrunch record: RRID:CVCL_2199
RRID:CVCL_0532
DOI: 10.1158/1078-0432.CCR-25-1749
Resource: (CLS Cat# 300342/p657_SK-OV-3, RRID:CVCL_0532)
Curator: @scibot
SciCrunch record: RRID:CVCL_0532
RRID:CVCL_0363
DOI: 10.1158/1078-0432.CCR-25-1749
Resource: (IZSLER Cat# BS TCL 181, RRID:CVCL_0363)
Curator: @scibot
SciCrunch record: RRID:CVCL_0363
RRID:SCR_016955
DOI: 10.1158/1078-0432.CCR-25-1098
Resource: CIBERSORT (RRID:SCR_016955)
Curator: @scibot
SciCrunch record: RRID:SCR_016955
RRID:SCR_005223
DOI: 10.1158/1078-0432.CCR-25-1098
Resource: STRING (RRID:SCR_005223)
Curator: @scibot
SciCrunch record: RRID:SCR_005223
RRID:SCR_001905
DOI: 10.1158/1078-0432.CCR-25-1098
Resource: R Project for Statistical Computing (RRID:SCR_001905)
Curator: @scibot
SciCrunch record: RRID:SCR_001905
RRID:SCR_003032
DOI: 10.1158/1078-0432.CCR-25-1098
Resource: Cytoscape (RRID:SCR_003032)
Curator: @scibot
SciCrunch record: RRID:SCR_003032
RRID:SCR_003199
DOI: 10.1158/1078-0432.CCR-25-1098
Resource: Gene Set Enrichment Analysis (RRID:SCR_003199)
Curator: @scibot
SciCrunch record: RRID:SCR_003199
RRID:SCR_008567
DOI: 10.1158/1078-0432.CCR-25-1098
Resource: Statistical Analysis System (RRID:SCR_008567)
Curator: @scibot
SciCrunch record: RRID:SCR_008567
RRID:SCR_016387
DOI: 10.1158/1078-0432.CCR-25-1098
Resource: Illumina NovaSeq 6000 Sequencing System (RRID:SCR_016387)
Curator: @scibot
SciCrunch record: RRID:SCR_016387
RRID:SCR_026310
DOI: 10.1158/1078-0432.CCR-25-0635
Resource: None
Curator: @scibot
SciCrunch record: RRID:SCR_026310
RRID:SCR_010279
DOI: 10.1158/1078-0432.CCR-25-0635
Resource: Adobe Illustrator (RRID:SCR_010279)
Curator: @scibot
SciCrunch record: RRID:SCR_010279
RRID:SCR_016341
DOI: 10.1158/1078-0432.CCR-25-0635
Resource: Seurat (RRID:SCR_016341)
Curator: @scibot
SciCrunch record: RRID:SCR_016341
RRID:SCR_022438
DOI: 10.1158/1078-0432.CCR-25-0089
Resource: University of Pennsylvania Penn Vet Comparative Pathology Core Facility (RRID:SCR_022438)
Curator: @scibot
SciCrunch record: RRID:SCR_022438
RRID:Addgene_17477
DOI: 10.1158/1078-0432.CCR-25-0089
Resource: RRID:Addgene_17477
Curator: @scibot
SciCrunch record: RRID:Addgene_17477
RRID:Addgene_12259
DOI: 10.1158/1078-0432.CCR-25-0089
Resource: RRID:Addgene_12259
Curator: @scibot
SciCrunch record: RRID:Addgene_12259
RRID:CVCL_1507
DOI: 10.1158/1078-0432.CCR-25-0089
Resource: (ATCC Cat# CRL-5906, RRID:CVCL_1507)
Curator: @scibot
SciCrunch record: RRID:CVCL_1507
RRID:CVCL_0063
DOI: 10.1158/1078-0432.CCR-25-0089
Resource: (RRID:CVCL_0063)
Curator: @scibot
SciCrunch record: RRID:CVCL_0063
RRID:CVCL_1473
DOI: 10.1158/1078-0432.CCR-25-0089
Resource: (CLS Cat# 300182/p740_NCI-H146, RRID:CVCL_1473)
Curator: @scibot
SciCrunch record: RRID:CVCL_1473
RRID:CVCL_LF68
DOI: 10.1158/1078-0432.CCR-25-0089
Resource: (RRID:CVCL_LF68)
Curator: @scibot
SciCrunch record: RRID:CVCL_LF68
RRID:CVCL_0186
DOI: 10.1158/1078-0432.CCR-25-0089
Resource: (IZSLER Cat# BS TCL 4, RRID:CVCL_0186)
Curator: @scibot
SciCrunch record: RRID:CVCL_0186
RRID:Addgene_12260
DOI: 10.1158/1078-0432.CCR-25-0089
Resource: RRID:Addgene_12260
Curator: @scibot
SciCrunch record: RRID:Addgene_12260
RRID:CVCL_E218
DOI: 10.1158/1078-0432.CCR-25-0089
Resource: (RRID:CVCL_E218)
Curator: @scibot
SciCrunch record: RRID:CVCL_E218
RRID:SCR_008567
DOI: 10.1158/1078-0432.CCR-24-4085
Resource: Statistical Analysis System (RRID:SCR_008567)
Curator: @scibot
SciCrunch record: RRID:SCR_008567
RRID:SCR_018536
DOI: 10.1158/0008-5472.CAN-25-4350
Resource: PyTorch (RRID:SCR_018536)
Curator: @scibot
SciCrunch record: RRID:SCR_018536
RRID:SCR_008633
DOI: 10.1158/0008-5472.CAN-25-4350
Resource: NumPy (RRID:SCR_008633)
Curator: @scibot
SciCrunch record: RRID:SCR_008633
RRID:SCR_015526
DOI: 10.1158/0008-5472.CAN-25-4350
Resource: OpenCV (RRID:SCR_015526)
Curator: @scibot
SciCrunch record: RRID:SCR_015526
RRID:SCR_024899
DOI: 10.1158/0008-5472.CAN-25-4350
Resource: lifelines (RRID:SCR_024899)
Curator: @scibot
SciCrunch record: RRID:SCR_024899
RRID:SCR_002577
DOI: 10.1158/0008-5472.CAN-25-4350
Resource: scikit-learn (RRID:SCR_002577)
Curator: @scibot
SciCrunch record: RRID:SCR_002577
RRID:SCR_006604
DOI: 10.1158/0008-5472.CAN-25-1407
Resource: Immune Epitope Database and Analysis Resource (IEDB) (RRID:SCR_006604)
Curator: @scibot
SciCrunch record: RRID:SCR_006604
RRID:SCR_015718
DOI: 10.1158/0008-5472.CAN-25-1407
Resource: RandomForest Package in R (RRID:SCR_015718)
Curator: @scibot
SciCrunch record: RRID:SCR_015718
RRID:SCR_002577
DOI: 10.1158/0008-5472.CAN-25-1407
Resource: scikit-learn (RRID:SCR_002577)
Curator: @scibot
SciCrunch record: RRID:SCR_002577
RRID:SCR_016234
DOI: 10.1158/0008-5472.CAN-25-1407
Resource: Boruta (RRID:SCR_016234)
Curator: @scibot
SciCrunch record: RRID:SCR_016234
RRID:SCR_021805
DOI: 10.1158/0008-5472.CAN-25-1407
Resource: PARASAIL (RRID:SCR_021805)
Curator: @scibot
SciCrunch record: RRID:SCR_021805
RRID:SCR_021138
DOI: 10.1158/0008-5472.CAN-25-1407
Resource: caret (RRID:SCR_021138)
Curator: @scibot
SciCrunch record: RRID:SCR_021138
RRID:SCR_015505
DOI: 10.1158/0008-5472.CAN-25-1407
Resource: glmnet (RRID:SCR_015505)
Curator: @scibot
SciCrunch record: RRID:SCR_015505
RRID:SCR_018926
DOI: 10.1158/0008-5472.CAN-25-1407
Resource: SeqKit (RRID:SCR_018926)
Curator: @scibot
SciCrunch record: RRID:SCR_018926
RRID:SCR_018725
DOI: 10.1158/0008-5472.CAN-25-1407
Resource: MiXCR (RRID:SCR_018725)
Curator: @scibot
SciCrunch record: RRID:SCR_018725
RRID:SCR_005531
DOI: 10.1158/0008-5472.CAN-25-1407
Resource: FLASH (RRID:SCR_005531)
Curator: @scibot
SciCrunch record: RRID:SCR_005531
RRID:SCR_016962
DOI: 10.1158/0008-5472.CAN-25-1407
Resource: fastp (RRID:SCR_016962)
Curator: @scibot
SciCrunch record: RRID:SCR_016962
RRID:SCR_012780
DOI: 10.1158/0008-5472.CAN-25-1407
Resource: IMGT - the international ImMunoGeneTics information system (RRID:SCR_012780)
Curator: @scibot
SciCrunch record: RRID:SCR_012780
RRID:SCR_016387
DOI: 10.1158/0008-5472.CAN-25-1407
Resource: Illumina NovaSeq 6000 Sequencing System (RRID:SCR_016387)
Curator: @scibot
SciCrunch record: RRID:SCR_016387
RRID:SCR_001905
DOI: 10.1158/0008-5472.CAN-24-4976
Resource: R Project for Statistical Computing (RRID:SCR_001905)
Curator: @scibot
SciCrunch record: RRID:SCR_001905
RRID:SCR_002798
DOI: 10.1158/0008-5472.CAN-24-3723
Resource: GraphPad Prism (RRID:SCR_002798)
Curator: @scibot
SciCrunch record: RRID:SCR_002798
RRID:AB_2736998
DOI: 10.1158/0008-5472.CAN-24-3723
Resource: (Cell Signaling Technology Cat# 46535, RRID:AB_2736998)
Curator: @scibot
SciCrunch record: RRID:AB_2736998
RRID:SCR_001575
DOI: 10.1158/0008-5472.CAN-24-3723
Resource: Enrichr (RRID:SCR_001575)
Curator: @scibot
SciCrunch record: RRID:SCR_001575
RRID:AB_3662112
DOI: 10.1158/0008-5472.CAN-24-3723
Resource: R and D Systems Cat# ARY022B, RRID:AB_3662112
Curator: @scibot
SciCrunch record: RRID:AB_3662112
RRID:SCR_014975
DOI: 10.1158/0008-5472.CAN-24-3723
Resource: Morpheus (RRID:SCR_014975)
Curator: @scibot
SciCrunch record: RRID:SCR_014975
RRID:AB_10859369
DOI: 10.1158/0008-5472.CAN-24-3723
Resource: (Cell Signaling Technology Cat# 8242, RRID:AB_10859369)
Curator: @scibot
SciCrunch record: RRID:AB_10859369
RRID:SCR_015058
DOI: 10.1158/0008-5472.CAN-24-3723
Resource: bcl2fastq (RRID:SCR_015058)
Curator: @scibot
SciCrunch record: RRID:SCR_015058
RRID:AB_2336520
DOI: 10.1158/0008-5472.CAN-24-3723
Resource: (MP Bio Cat# 08810534, RRID:AB_2335324)
Curator: @scibot
SciCrunch record: RRID:AB_2335324
RRID:AB_2336529
DOI: 10.1158/0008-5472.CAN-24-3723
Resource: (Thermo Fisher Scientific Cat# ICN820025, RRID:AB_2335333)
Curator: @scibot
SciCrunch record: RRID:AB_2335333
SCR_015687
DOI: 10.1152/physiolgenomics.00066.2025
Resource: DESeq2 (RRID:SCR_015687)
Curator: @scibot
SciCrunch record: RRID:SCR_015687
RRID:SCR_018361
DOI: 10.1152/physiolgenomics.00066.2025
Resource: Biorender (RRID:SCR_018361)
Curator: @scibot
SciCrunch record: RRID:SCR_018361
JAX:000664
DOI: 10.1152/physiolgenomics.00066.2025
Resource: RRID:IMSR_JAX:000664
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:000664
RRID:SCR_005223
DOI: 10.1152/physiolgenomics.00066.2025
Resource: STRING (RRID:SCR_005223)
Curator: @scibot
SciCrunch record: RRID:SCR_005223
RRID:SCR_005514
DOI: 10.1152/physiolgenomics.00066.2025
Resource: HTSeq (RRID:SCR_005514)
Curator: @scibot
SciCrunch record: RRID:SCR_005514
RRID:SCR_002798
DOI: 10.1152/physiolgenomics.00066.2025
Resource: GraphPad Prism (RRID:SCR_002798)
Curator: @scibot
SciCrunch record: RRID:SCR_002798
RRID:SCR_008653
DOI: 10.1152/physiolgenomics.00066.2025
Resource: Ingenuity Pathway Analysis (RRID:SCR_008653)
Curator: @scibot
SciCrunch record: RRID:SCR_008653
RRID:SCR_012773
DOI: 10.1152/physiolgenomics.00066.2025
Resource: KEGG (RRID:SCR_012773)
Curator: @scibot
SciCrunch record: RRID:SCR_012773
RRID:SCR_002798
DOI: 10.1152/ajpendo.00365.2024
Resource: GraphPad Prism (RRID:SCR_002798)
Curator: @scibot
SciCrunch record: RRID:SCR_002798
RRID:SCR_013726
DOI: 10.1152/ajpendo.00365.2024
Resource: G*Power (RRID:SCR_013726)
Curator: @scibot
SciCrunch record: RRID:SCR_013726
RRID:SCR_021322
DOI: 10.1152/ajpcell.00567.2025
Resource: ChIPseeker (RRID:SCR_021322)
Curator: @scibot
SciCrunch record: RRID:SCR_021322
RRID:SCR_002414
DOI: 10.1152/ajpcell.00567.2025
Resource: VennDiagram (RRID:SCR_002414)
Curator: @scibot
SciCrunch record: RRID:SCR_002414
RRID:SCR_021287
DOI: 10.1152/ajpcell.00567.2025
Resource: Cornell University Biotechnology Resource Center Epigenomics Core Facility (RRID:SCR_021287)
Curator: @scibot
SciCrunch record: RRID:SCR_021287
RRID:SCR_006786
DOI: 10.1152/ajpcell.00567.2025
Resource: WebGestalt: WEB-based GEne SeT AnaLysis Toolkit (RRID:SCR_006786)
Curator: @scibot
SciCrunch record: RRID:SCR_006786
RRID:SCR_018145
DOI: 10.1152/ajpcell.00567.2025
Resource: KEGG PATHWAY Database (RRID:SCR_018145)
Curator: @scibot
SciCrunch record: RRID:SCR_018145
RRID:CVCL_0428
DOI: 10.1126/sciadv.adu2276
Resource: (ECACC Cat# 85062806, RRID:CVCL_0428)
Curator: @scibot
SciCrunch record: RRID:CVCL_0428
RRID:CVCL_WB21
DOI: 10.1126/sciadv.adu2276
Resource: (RRID:CVCL_WB21)
Curator: @scibot
SciCrunch record: RRID:CVCL_WB21
RRID:SCR_001622
DOI: 10.1097/PR9.0000000000001353
Resource: MATLAB (RRID:SCR_001622)
Curator: @scibot
SciCrunch record: RRID:SCR_001622
RRID:AB_532313
DOI: 10.1096/fj.202402070R
Resource: (Sigma-Aldrich Cat# O6264, RRID:AB_532313)
Curator: @scibot
SciCrunch record: RRID:AB_532313
RRID:AB_326364
DOI: 10.1096/fj.202402070R
Resource: (Thermo Fisher Scientific Cat# MA1-072, RRID:AB_326364)
Curator: @scibot
SciCrunch record: RRID:AB_326364
RRID:AB_2288042
DOI: 10.1096/fj.202402070R
Resource: (Cell Signaling Technology Cat# 2148, RRID:AB_2288042)
Curator: @scibot
SciCrunch record: RRID:AB_2288042
RRID:AB_2191441
DOI: 10.1096/fj.202402070R
Resource: (Abcam Cat# ab33780, RRID:AB_2191441)
Curator: @scibot
SciCrunch record: RRID:AB_2191441
RRID:CVCL_0493
DOI: 10.1096/fj.202402070R
Resource: (ATCC Cat# TIB-71, RRID:CVCL_0493)
Curator: @scibot
SciCrunch record: RRID:CVCL_0493
RRID:AB_2936298
DOI: 10.1096/fj.202402070R
Resource: (Abcam Cat# ab300421, RRID:AB_2936298)
Curator: @scibot
SciCrunch record: RRID:AB_2936298
RRID:IMSR_JAX:028020
DOI: 10.1096/fj.202402070R
Resource: (IMSR Cat# JAX_028020,RRID:IMSR_JAX:028020)
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:028020
RRID:AB_3095816
DOI: 10.1096/fj.202402070R
Resource: (Abcam Cat# ab181861, RRID:AB_3095816)
Curator: @scibot
SciCrunch record: RRID:AB_3095816
RRID:Addgene_50465
DOI: 10.1093/nar/gkaf1304
Resource: RRID:Addgene_50465
Curator: @scibot
SciCrunch record: RRID:Addgene_50465
RRID:SCR_018206
DOI: 10.1093/nar/gkaf1244
Resource: University of California San Francisco Parnassus Flow Cytometry Core Facility (RRID:SCR_018206)
Curator: @scibot
SciCrunch record: RRID:SCR_018206
RRID:SCR_025320
DOI: 10.1093/gpbjnl/qzaf067
Resource: Genrich (RRID:SCR_025320)
Curator: @scibot
SciCrunch record: RRID:SCR_025320
SCR_011809
DOI: 10.1093/gigascience/giaf142
Resource: Infernal (RRID:SCR_011809)
Curator: @scibot
SciCrunch record: RRID:SCR_011809
SCR_008992
DOI: 10.1093/gigascience/giaf142
Resource: GMAP (RRID:SCR_008992)
Curator: @scibot
SciCrunch record: RRID:SCR_008992
RRID:SCR_018403
DOI: 10.1093/gigascience/giaf142
Resource: None
Curator: @scibot
SciCrunch record: RRID:SCR_018403
RRID:SCR_018924
DOI: 10.1093/gigascience/giaf142
Resource: Computational Analysis of gene Family Evolution (RRID:SCR_018924)
Curator: @scibot
SciCrunch record: RRID:SCR_018924
RRID:SCR_011798
DOI: 10.1093/gigascience/giaf142
Resource: Circos (RRID:SCR_011798)
Curator: @scibot
SciCrunch record: RRID:SCR_011798
RRID:SCR_019121
DOI: 10.1093/gigascience/giaf142
Resource: Tracer (RRID:SCR_019121)
Curator: @scibot
SciCrunch record: RRID:SCR_019121
RRID:SCR_022067
DOI: 10.1093/gigascience/giaf142
Resource: MCScanX (RRID:SCR_022067)
Curator: @scibot
SciCrunch record: RRID:SCR_022067
RRID:SCR_017307
DOI: 10.1093/gigascience/giaf142
Resource: BEAST2 (RRID:SCR_017307)
Curator: @scibot
SciCrunch record: RRID:SCR_017307
RRID:SCR_026633
DOI: 10.1093/gigascience/giaf142
Resource: None
Curator: @scibot
SciCrunch record: RRID:SCR_026633
RRID:SCR_007891
DOI: 10.1093/gigascience/giaf142
Resource: Rfam (RRID:SCR_007891)
Curator: @scibot
SciCrunch record: RRID:SCR_007891
RRID:SCR_011812
DOI: 10.1093/gigascience/giaf142
Resource: MUSCLE (RRID:SCR_011812)
Curator: @scibot
SciCrunch record: RRID:SCR_011812
RRID:SCR_008637
DOI: 10.1093/gigascience/giaf142
Resource: tRNAscan-SE (RRID:SCR_008637)
Curator: @scibot
SciCrunch record: RRID:SCR_008637
RRID:SCR_017118
DOI: 10.1093/gigascience/giaf142
Resource: OrthoFinder (RRID:SCR_017118)
Curator: @scibot
SciCrunch record: RRID:SCR_017118
RRID:SCR_022066
DOI: 10.1093/gigascience/giaf142
Resource: RAxML Next Generation (RRID:SCR_022066)
Curator: @scibot
SciCrunch record: RRID:SCR_022066
RRID:SCR_007105
DOI: 10.1093/gigascience/giaf142
Resource: CD-HIT (RRID:SCR_007105)
Curator: @scibot
SciCrunch record: RRID:SCR_007105
RRID:SCR_008417
DOI: 10.1093/gigascience/giaf142
Resource: Augustus (RRID:SCR_008417)
Curator: @scibot
SciCrunch record: RRID:SCR_008417
RRID:SCR_013048
DOI: 10.1093/gigascience/giaf142
Resource: Trinity (RRID:SCR_013048)
Curator: @scibot
SciCrunch record: RRID:SCR_013048
RRID:SCR_014656
DOI: 10.1093/gigascience/giaf142
Resource: PASA (RRID:SCR_014656)
Curator: @scibot
SciCrunch record: RRID:SCR_014656
RRID:SCR_014659
DOI: 10.1093/gigascience/giaf142
Resource: EVidenceModeler (RRID:SCR_014659)
Curator: @scibot
SciCrunch record: RRID:SCR_014659
RRID:SCR_018930
DOI: 10.1093/gigascience/giaf142
Resource: Trinotate (RRID:SCR_018930)
Curator: @scibot
SciCrunch record: RRID:SCR_018930
RRID:SCR_007936
DOI: 10.1093/gigascience/giaf142
Resource: SNAP (RRID:SCR_007936)
Curator: @scibot
SciCrunch record: RRID:SCR_007936
RRID:SCR_012954
DOI: 10.1093/gigascience/giaf142
Resource: RepeatMasker (RRID:SCR_012954)
Curator: @scibot
SciCrunch record: RRID:SCR_012954
RRID:SCR_022964
DOI: 10.1093/gigascience/giaf142
Resource: Merqury (RRID:SCR_022964)
Curator: @scibot
SciCrunch record: RRID:SCR_022964
RRID:SCR_004870
DOI: 10.1093/gigascience/giaf142
Resource: NCBI BLAST (RRID:SCR_004870)
Curator: @scibot
SciCrunch record: RRID:SCR_004870
RRID:SCR_017623
DOI: 10.1093/gigascience/giaf142
Resource: LTR_retriever (RRID:SCR_017623)
Curator: @scibot
SciCrunch record: RRID:SCR_017623
RRID:SCR_015027
DOI: 10.1093/gigascience/giaf142
Resource: RepeatModeler (RRID:SCR_015027)
Curator: @scibot
SciCrunch record: RRID:SCR_015027
RRID:SCR_015008
DOI: 10.1093/gigascience/giaf142
Resource: BUSCO (RRID:SCR_015008)
Curator: @scibot
SciCrunch record: RRID:SCR_015008
RRID:SCR_021169
DOI: 10.1093/gigascience/giaf142
Resource: Repbase (RRID:SCR_021169)
Curator: @scibot
SciCrunch record: RRID:SCR_021169
RRID:SCR_017014
DOI: 10.1093/gigascience/giaf142
Resource: GenomeScope (RRID:SCR_017014)
Curator: @scibot
SciCrunch record: RRID:SCR_017014
RRID:SCR_017644
DOI: 10.1093/gigascience/giaf142
Resource: LACHESIS (RRID:SCR_017644)
Curator: @scibot
SciCrunch record: RRID:SCR_017644
RRID:SCR_005491
DOI: 10.1093/gigascience/giaf142
Resource: Jellyfish (RRID:SCR_005491)
Curator: @scibot
SciCrunch record: RRID:SCR_005491
RRID:SCR_017643
DOI: 10.1093/gigascience/giaf142
Resource: HiC-Pro (RRID:SCR_017643)
Curator: @scibot
SciCrunch record: RRID:SCR_017643
RRID:SCR_027293
DOI: 10.1093/gigascience/giaf142
Resource: None
Curator: @scibot
SciCrunch record: RRID:SCR_027293
RRID:SCR_010910
DOI: 10.1093/gigascience/giaf142
Resource: BWA (RRID:SCR_010910)
Curator: @scibot
SciCrunch record: RRID:SCR_010910
RRID:SCR_015530
DOI: 10.1093/gigascience/giaf142
Resource: HISAT2 (RRID:SCR_015530)
Curator: @scibot
SciCrunch record: RRID:SCR_015530
RRID:SCR_016385
DOI: 10.1093/gigascience/giaf142
Resource: Illumina HiSeq X Ten (RRID:SCR_016385)
Curator: @scibot
SciCrunch record: RRID:SCR_016385
RRID:SCR_018095
DOI: 10.1093/gigascience/giaf142
Resource: Thermo Fisher Qubit fluorimeter (RRID:SCR_018095)
Curator: @scibot
SciCrunch record: RRID:SCR_018095
RRID:SCR_017980
DOI: 10.1093/gigascience/giaf142
Resource: DNBSEQ-G400 (RRID:SCR_017980)
Curator: @scibot
SciCrunch record: RRID:SCR_017980
RRID:SCR_019417
DOI: 10.1093/gigascience/giaf142
Resource: Agilent 5200 Fragment Analyzer System (RRID:SCR_019417)
Curator: @scibot
SciCrunch record: RRID:SCR_019417
RRID:SCR_017788
DOI: 10.1093/gigascience/giaf142
Resource: Stanford University Shared FACS Core Facility (RRID:SCR_017788)
Curator: @scibot
SciCrunch record: RRID:SCR_017788
RRID:MMRRC_034829-JAX
DOI: 10.1093/braincomms/fcaf472
Resource: (MMRRC Cat# 034829-JAX,RRID:MMRRC_034829-JAX)
Curator: @scibot
SciCrunch record: RRID:MMRRC_034829-JAX
SCR_008125
DOI: 10.1093/bib/bbaf654
Resource: MetaCore (RRID:SCR_008125)
Curator: @scibot
SciCrunch record: RRID:SCR_008125
SCR_008117
DOI: 10.1093/bib/bbaf654
Resource: Ingenuity Pathways Knowledge Base (RRID:SCR_008117)
Curator: @scibot
SciCrunch record: RRID:SCR_008117
RRID:SCR_017696
DOI: 10.1091/mbc.E25-04-0154
Resource: University of Delaware Center for Bioinformatics and Computational Biology Core Facility (RRID:SCR_017696)
Curator: @scibot
SciCrunch record: RRID:SCR_017696
AB_2173235
DOI: 10.1080/14756366.2025.2596950
Resource: (Proteintech Cat# 11214-1-AP, RRID:AB_2173235)
Curator: @scibot
SciCrunch record: RRID:AB_2173235
AB_10642566
DOI: 10.1080/14756366.2025.2596950
Resource: (Proteintech Cat# 11334-1-AP, RRID:AB_10642566)
Curator: @scibot
SciCrunch record: RRID:AB_10642566
CVCL_4U18
DOI: 10.1080/14756366.2025.2596950
Resource: (Millipore Cat# SCC109, RRID:CVCL_4U18)
Curator: @scibot
SciCrunch record: RRID:CVCL_4U18
AB_1185567
DOI: 10.1080/14756366.2025.2596950
Resource: (Thermo Fisher Scientific Cat# 32460, RRID:AB_1185567)
Curator: @scibot
SciCrunch record: RRID:AB_1185567
RRID:SCR_017929
DOI: 10.1073/pnas.2523024122
Resource: New York University School of Medicine Langone Health Genome Technology Center Core Facility (RRID:SCR_017929)
Curator: @scibot
SciCrunch record: RRID:SCR_017929
RRID:SCR_007317
DOI: 10.1038/s43587-024-00685-1
Resource: NIA Aged Rodent Colonies (RRID:SCR_007317)
Curator: @scibot
SciCrunch record: RRID:SCR_007317
RRID:AB_2534114
DOI: 10.1038/s41598-025-32061-3
Resource: (Thermo Fisher Scientific Cat# A-11070, RRID:AB_2534114)
Curator: @scibot
SciCrunch record: RRID:AB_2534114
RRID:AB_2533073
DOI: 10.1038/s41598-025-32061-3
Resource: (Thermo Fisher Scientific Cat# 32-2700, RRID:AB_2533073)
Curator: @scibot
SciCrunch record: RRID:AB_2533073
RRID:MGI:5698383
DOI: 10.1038/s41598-025-32061-3
Resource: RRID:MGI:5698383
Curator: @scibot
SciCrunch record: RRID:MGI:5698383
RRID:Addgene_226261
DOI: 10.1038/s41598-025-27488-7
Resource: None
Curator: @scibot
SciCrunch record: RRID:Addgene_226261
RRID:Addgene_133962
DOI: 10.1038/s41598-025-27488-7
Resource: RRID:Addgene_133962
Curator: @scibot
SciCrunch record: RRID:Addgene_133962
RRID:AB_2749815
DOI: 10.1038/s41594-025-01639-w
Resource: (Thermo Fisher Scientific Cat# 88836, RRID:AB_2749815)
Curator: @scibot
SciCrunch record: RRID:AB_2749815
RRID:AB_2637089
DOI: 10.1038/s41594-025-01639-w
Resource: (Sigma-Aldrich Cat# M8823, RRID:AB_2637089)
Curator: @scibot
SciCrunch record: RRID:AB_2637089
RRID:AB_2105622
DOI: 10.1038/s41594-025-01639-w
Resource: (Cell Signaling Technology Cat# 2983, RRID:AB_2105622)
Curator: @scibot
SciCrunch record: RRID:AB_2105622
RRID:AB_2099233
DOI: 10.1038/s41594-025-01639-w
Resource: (Cell Signaling Technology Cat# 7074, RRID:AB_2099233)
Curator: @scibot
SciCrunch record: RRID:AB_2099233