592 Matching Annotations
  1. Oct 2022
  2. Sep 2022
  3. Feb 2022
    1. Understanding the effects of introducing Solar PV and how it can affect “Power Factor” on complex Industrial/Commercial sites
  4. Jan 2022
  5. Dec 2021
  6. Nov 2021
  7. Aug 2021
  8. Jul 2021
    1. In order to use Z-Wave, Zigbee or other integrations that require access to devices, you need to map the appropriate device into the container.
  9. Jun 2021
  10. Oct 2020
    1. Future kernel updates would require the updated kernels to be signed again, so it makes sense to put the signing commands in a script that can be run at a later date as necessary. A sample script /root/module-signing/sign-vbox-modules is given below.
  11. Jul 2020
    1. A shell script to automate the retrieval and installation of the Oracle (Sun) Java Runtime Environment
  12. May 2020
  13. Jan 2020
  14. Nov 2019
    1. CompizConfig Settings Manager's Place windows plug-in which will allow an application that isn't running to open on its particular workspace at its pre-defined X-Y coordinate,
  15. Jul 2019
  16. May 2019
  17. Feb 2019
  18. Jan 2019
  19. Dec 2018
  20. Nov 2018
  21. Oct 2018
  22. Sep 2018
    1. HOMER
    2. Target enhancers are identified by leave-one-ou

      Likelihood ratio test as in ISMARA?

    3. ridge regressio
    4. centered and scale

      Likely centering and scaling (by SD) rows, i.e., across samples.

    5. motifs without any hits in the supplied sequencesand motifs mapping to transcription factors with low expression(default threshold: 1 normalized read per kilobase) are remove


    6. motif matrix is centered

      Could mean double-centered, or row- or column-centered. Rows correspond to enhancers, columns to motifs. Centering columns makes sense; rows not so much.

    7. Motif search, calculation of motif activities, and target prediction
    1. Unlike simple k-mer searching, these methods were designed to predict individual RBP binding sites. They go beyond the motif content alone, for instance by taking into account site accessibility (Li et al. 2010; Zhang et al. 2013) or clustering (Akerman et al. 2009; Zhang et al. 2013).

      Suggests that RBPmap is a good choice, provided one uses the weighted rank score accounting for clustering and the conservation filter. mCarts by Zhang et al. applied to the ENCODE CLIP data would complement RBPmap, but what would be even better is if ENCODE had already applied it to their data and can provide the binding site predictions.

    2. Estimating the prevalence of functional exonic splice regulatory information
  23. Aug 2018
    1. RHEL mount hangs: nfs: server [...] not responding, still trying
  24. Jul 2018
    1. repeat expansion at IIL1 leads to increased accumulation of 24-nt siRNAs in a temperature-dependent manner that correlates with the iil phenotype. We show that DCL3 and other components of the RNA-dependent DNA methylation (RdDM) pathway are essential for this siRNA-directed epigenetic gene silencing
  25. Jun 2018
    1. Dnmt2 mediates intergenerational transmission of paternally acquired metabolic disorders through sperm small non-coding RNAs

      Queuosine metabolite necessary for DNMT2-induced tRNA modification; salvaged from bacteria of microbiome

  26. May 2018
    1. one level is chosen as the “reference”, and its mean behaviour is represented by the intercept. Each column of the resulting matrix represents the difference between the mean of one level and this reference level
  27. Apr 2018