https://bzawilski.medium.com/using-zettelkasten-and-obsidian-to-learn-more-effectively-333ac90d001a

Facile overview article that touches on the basics but looses sight of the longer flow of history.

Don't recommend.

https://dev.to/tmhall99/beyond-taking-notes-or-how-i-joined-the-roamcult-22k3

Lots of resources on the topic to start down a rabbit hole, but no clear outline or thesis of what is going on or why it's useful. At best a list of potentially useful links for getting started.

Leah Keating on Twitter: “This work with @DavidJPOS and @gleesonj is now on arXiv (https://t.co/hxjZnCmKcM): ‘A multi-type branching process method for modelling complex contagion on clustered networks’ Here is a quick overview of our paper: (1/6) https://t.co/3jQ2flhk71” / Twitter. (n.d.). Retrieved July 23, 2021, from https://twitter.com/leahakeating/status/1418150117106978816

The CDC Should Be More Like Wikipedia—The Atlantic. (n.d.). Retrieved July 23, 2021, from https://www.theatlantic.com/ideas/archive/2021/07/cdc-should-be-more-like-wikipedia/619469/

https://www.youtube.com/watch?v=yL_-1d9OSdk

Maatman, F. O. (2021). Psychology’s Theory Crisis, and Why Formal Modelling Cannot Solve It. PsyArXiv. https://doi.org/10.31234/osf.io/puqvs

Ścigała, K. A., Schild, C., Lilleholt, L., Moshagen, M., Stückler, A., Zettler, I., & Pfattheicher, S. (2021). Aversive personality and COVID-19: A first review and meta-analysis. PsyArXiv. https://doi.org/10.31234/osf.io/vg465

RQs

Romero, P., Mikiya, Y., Nakatsuma, T., Fitz, S., & Koch, T. (2021). Modelling Personality Change During Extreme Exogenous Conditions. PsyArXiv. https://doi.org/10.31234/osf.io/rtmjw

Why crowded meetings and conference rooms make you so, so tired—The Washington Post. (n.d.). Retrieved July 19, 2021, from https://www.washingtonpost.com/business/2019/06/06/why-crowded-meetings-conference-rooms-make-you-so-so-tired/

Covid-19: Hong Kong study shows BioNTech vaccines create 10 times more antibodies than Sinovac | Hong Kong Free Press HKFP. (n.d.). Retrieved July 18, 2021, from https://hongkongfp.com/2021/07/16/covid-19-hong-kong-study-shows-biontech-vaccines-create-10-times-more-antibodies-than-sinovac/

Baker, N., & Ball, P. (2021). Coronapod: Does England’s COVID strategy risk breeding deadly variants? Nature, d41586-021-01977–x. https://doi.org/10.1038/d41586-021-01977-x

Woodford, L., & Bussey, L. (2021). Exploring the Perceived Impact of the COVID-19 Pandemic Social Distancing Measures on Athlete Wellbeing: A Qualitative Study Utilising Photo-Elicitation. Frontiers in Psychology, 12, 624023. https://doi.org/10.3389/fpsyg.2021.624023

Prof Nichola Raihani on Twitter: “Submitted a paper reporting null results to a mid tier journal. Guess how it went. I literally don’t care at this point but I do feel bad for the first author (who I won’t name here). Https://t.co/sX5lTcEl29” / Twitter. (n.d.). Retrieved July 16, 2021, from https://twitter.com/nicholaraihani/status/1415308025179656194

The easy way to manage scientific publications and bookmarks

BibSonomy helps you to manage your publications and bookmarks, to collaborate with your colleagues and to find new interesting material for your research.

Kwon, D. (2021). This ‘super antibody’ for COVID fights off multiple coronaviruses. Nature, d41586-021-01917–01919. https://doi.org/10.1038/d41586-021-01917-9

New study estimates mask wearing could cut R number by 25%, not 0.25—Full Fact. (n.d.). Retrieved July 15, 2021, from https://fullfact.org/online/andy-burnham-mayor-manchester-masks-misquote/

Lewis, D. (2021). Long COVID and kids: Scientists race to find answers. Nature, d41586-021-01935–01937. https://doi.org/10.1038/d41586-021-01935-7

Herrera-Diestra, J. L., Tildesley, M., Shea, K., & Ferrari, M. (2021). Network structure and disease risk for an endemic infectious disease. ArXiv:2107.06186 [Physics, q-Bio]. http://arxiv.org/abs/2107.06186

New study indicates conspiracy theory believers have less developed critical thinking abilities. (n.d.). Retrieved July 12, 2021, from https://www.psypost.org/2021/07/new-study-indicates-conspiracy-theory-believers-have-less-developed-critical-thinking-ability-61347

Logg, Jennifer M., and Charles A. Dorison. “Pre-Registration: Weighing Costs and Benefits for Researchers.” Organizational Behavior and Human Decision Processes 167 (November 1, 2021): 18–27. https://doi.org/10.1016/j.obhdp.2021.05.006.

Erlich, A., Garner, C., Pennycook, G., & Rand, D. G. (2021). Does Analytic Thinking Insulate Against Pro-Kremlin Disinformation? Evidence from Ukraine [Preprint]. PsyArXiv. https://doi.org/10.31234/osf.io/4yrdj

van der Plas, E., Mason, D., Livingston, L. A., Craigie, J., Happé, F., & Fleming, S. M. (2021). Computations of confidence are modulated by mentalizing ability [Preprint]. PsyArXiv. https://doi.org/10.31234/osf.io/c4pzj

Bunker, C. J., & Varnum, M. E. W. (2021). How Strong is the Association Between Social Media Use and False Consensus? [Preprint]. PsyArXiv. https://doi.org/10.31234/osf.io/eyjaq

Nogrady, B. (2021). Mounting evidence suggests Sputnik COVID vaccine is safe and effective. Nature. https://doi.org/10.1038/d41586-021-01813-2

Apparently an early internet meme...

In the future, we recommend that toasters be sold in six-packs to accomodate important SPT research.

Definitely an important finding! :)

Revisiting this essay to review it in the framing of digital gardens.

In a "gardens and streams" version of this metaphor, the stream is flow and the garden is stock.

This also fits into a knowledge capture, growth, and innovation framing. The stream are small atomic ideas flowing by which may create new atomic ideas. These then need to be collected (in a garden) where they can be nurtured and grow into new things.

Clippings of these new growth can be placed back into the stream to move on to other gardeners. Clever gardeners will also occasionally browse through the gardens of others to see bigger picture versions of how their gardens might become.

Proper commonplacing is about both stock and flow. The unwritten rule is that one needs to link together ideas and expand them in places either within the commonplace or external to it: essays, papers, articles, books, or other larger structures which then become stock for others.

While some creators appear to be about all stock in the modern era, it's just not true. They're consuming streams (flow) from other (perhaps richer) sources (like articles, books, television rather than social media) and building up their own stock in more private (or at least not public) places. Then they release that article, book, film, television show which becomes content stream for others.

While we can choose to create public streams, but spending our time in other less information dense steams is less useful. Better is to keep a reasonably curated stream to see which other gardens to go visit.

Currently is the online media space we have structures like microblogs and blogs (and most social media in general) which are reasonably good at creating streams (flow) and blogs, static sites, and wikis which are good for creating gardens (stock).

What we're missing is a structure with the appropriate and attendant UI that can help us create both a garden and a stream simultaneously. It would be nice to have a wiki with a steam-like feed out for the smaller attendant ideas, but still allow the evolutionary building of bigger structures, which could also be placed into the stream at occasional times.

I can imagine something like a MediaWiki with UI for placing small note-like ideas into other streams like Twitter, but which supports Webmention so that ideas that come back from Twitter or other consumers of one's stream can be placed into one's garden. Perhaps in a Zettelkasten like way, one could collect atomic notes into their wiki and then transclude those ideas into larger paragraphs and essays within the same wiki on other pages which might then become articles, books, videos, audio, etc.

Obsidian, Roam Research do a somewhat reasonable job on the private side and have some facility for collecting data, but have no UI for sharing out into streams.

Lewis, D. (2021). Mix-and-match COVID vaccines: The case is growing, but questions remain. Nature. https://doi.org/10.1038/d41586-021-01805-2

Hughes, B., Miller-Idriss, C., Piltch-Loeb, R., White, K., Creizis, M., Cain, C., & Savoia, E. (2021). Development of a Codebook of Online Anti-Vaccination Rhetoric to Manage COVID-19 Vaccine Misinformation [Preprint]. Public and Global Health. https://doi.org/10.1101/2021.03.23.21253727

Dr. Jeff Benyacar on Twitter: “@AlexBerenson ‘Even if a link between myocarditis and the vaccine holds up, the condition is usually mild, requiring treatment only with anti-inflammatory drugs, whereas COVID-19 infection can also cause serious disease and long-term side effects, even in young people.’ https://t.co/3VQprF7bIz” / Twitter. (n.d.). Retrieved July 2, 2021, from https://twitter.com/jbenyacar/status/1399851524487106562?s=12

Adam Kucharski on Twitter: “Useful data 👇– quick look suggests odds ratio for detection of B.1.617.2 relative to non-B.1.617.2 in vaccinated group compared to controls is 2.7 (95% CI: 0.7-10) after one dose and 1.2 (0.4-3.6) after two...” / Twitter. (n.d.). Retrieved July 2, 2021, from https://twitter.com/AdamJKucharski/status/1400443351908892675?s=20

Buckee, C., Noor, A., & Sattenspiel, L. (2021). Thinking clearly about social aspects of infectious disease transmission. Nature. https://doi.org/10.1038/s41586-021-03694-x

Markowitz, D. M., Song, H. (Jin), & Taylor, S. H. (2021). Tracing the Adoption and Effects of Open Science in Communication Research. PsyArXiv. https://doi.org/10.31234/osf.io/dsf67

Policy Opportunities for the Remote Economy | Upwork. (n.d.). Retrieved July 2, 2021, from https://www.upwork.com/press/releases/policy-opportunities-for-the-remote-economy

APS Global Collaboration on COVID-19 – Association for Psychological Science – APS. (n.d.). Retrieved July 2, 2021, from https://www.psychologicalscience.org/covid-initiative

You need to establish boundaries with respect to what you want to learn, otherwise you'll keep going towards whatever catches your attention in the moment.

Oransky, A. I. (2021, June 29). Paper claiming two deaths from COVID-19 vaccination for every three prevented cases earns expression of concern. Retraction Watch. https://retractionwatch.com/2021/06/29/paper-claiming-two-deaths-from-covid-19-vaccination-for-every-three-prevented-cases-earns-expression-of-concern/

Simon DeDeo and Elizabeth Hobson on equality and hierarchy | Santa Fe Institute. (n.d.). Retrieved 30 June 2021, from https://www.santafe.edu/news-center/news/simon-dedeo-and-elizabeth-hobson-equality-and-hierarchy

Soderberg, C. K., Errington, T. M., Schiavone, S. R., Bottesini, J., Thorn, F. S., Vazire, S., Esterling, K. M., & Nosek, B. A. (2021). Initial evidence of research quality of registered reports compared with the standard publishing model. Nature Human Behaviour, 1–8. https://doi.org/10.1038/s41562-021-01142-4

See how age and illnesses change the risk of dying from covid-19 | The Economist. (n.d.). Retrieved June 29, 2021, from https://www.economist.com/graphic-detail/covid-pandemic-mortality-risk-estimator

Living normally, with Covid-19: Task force ministers on how S’pore is drawing road map for new normal, Opinion News & Top Stories—The Straits Times. (n.d.). Retrieved June 29, 2021, from https://www.straitstimes.com/opinion/living-normally-with-covid-19

How long do COVID vaccines take to start working? (n.d.). Retrieved June 29, 2021, from https://theconversation.com/how-long-do-covid-vaccines-take-to-start-working-161876?utm_source=twitter&utm_medium=bylinetwitterbutton

Lipsitch, M., & Kahn, R. (2021). Interpreting vaccine efficacy trial results for infection and transmission. Vaccine, 39(30), 4082–4088. https://doi.org/10.1016/j.vaccine.2021.06.011

Shapiro, J., Dean, N. E., Madewell, Z. J., Yang, Y., Halloran, M. E., & Longini, I. (2021). Efficacy Estimates for Various COVID-19 Vaccines: What we Know from the Literature and Reports [Preprint]. Epidemiology. https://doi.org/10.1101/2021.05.20.21257461

A Marm Kilpatrick on Twitter: “How effective are vaccines vs severe & all disease, death, infection, & transmission? Very nice collection of studies assessing different aspects of vaccine protection by Julia Shapiro (on twitter?) @nataliexdean @betzhallo @ilongini & 2 others. Thread https://t.co/mhe0DufVtH” / Twitter. (n.d.). Retrieved June 28, 2021, from https://twitter.com/DiseaseEcology/status/1395848357461954563

Richard McElreath 🍜 on Twitter: “Everything is selection effects, always has been. From page 162 of my book: Https://t.co/tQaeF2LXkW” / Twitter. (n.d.). Retrieved June 28, 2021, from https://twitter.com/rlmcelreath/status/1396040993175126018

40 Iowa infectious disease doctors recommend COVID-19 vaccines. (n.d.). Retrieved June 28, 2021, from https://eu.desmoinesregister.com/story/opinion/columnists/iowa-view/2021/06/27/iowa-infectious-disease-doctors-recommend-covid-19-vaccines/7777363002/

Duarte-Salles, T., & Prieto-Alhambra, D. (2021). Heterologous vaccine regimens against COVID-19. The Lancet, S0140673621014422. https://doi.org/10.1016/S0140-6736(21)01442-2

Borobia, A. M., Carcas, A. J., Pérez-Olmeda, M., Castaño, L., Bertran, M. J., García-Pérez, J., Campins, M., Portolés, A., González-Pérez, M., García Morales, M. T., Arana-Arri, E., Aldea, M., Díez-Fuertes, F., Fuentes, I., Ascaso, A., Lora, D., Imaz-Ayo, N., Barón-Mira, L. E., Agustí, A., … Torvisco, J. M. (2021). Immunogenicity and reactogenicity of BNT162b2 booster in ChAdOx1-S-primed participants (CombiVacS): A multicentre, open-label, randomised, controlled, phase 2 trial. The Lancet, S0140673621014203. https://doi.org/10.1016/S0140-6736(21)01420-3

Jigsaw. (2021, March 17). Distraction Helps Misinformation Spread. Thinking About Accuracy Can Reduce it. Medium. https://medium.com/jigsaw/distraction-helps-misinformation-spread-thinking-about-accuracy-can-reduce-it-a4e5d8371a85

An interesting tool for taking notes from Jeremy Ho. Designed with Roam Research in mind.

The Eloquent tool is available to install! Capture ideas in-context with:<br>• On-page highlighting<br>• Nested bullets<br>• /snippets<br>• [[braces]] and #tag syntax<br>Quick capture is a hotkey away. Bonus hotkey sends your highlights/links to @RoamResearch pic.twitter.com/vLLbPX4zwW

— Jeremy Ho (@jeremyqho) July 21, 2020

I wish it could save data as a local text or markdown file so it would also be easier to use with Obsidian or other note taking tools. It's similar in nature to the Roam Highlighter extension.

Details at https://www.notion.so/Eloquent-Resource-Center-72f95c2a71d34c5181e4907edf7a96e1

Regev-Yochay, G., Amit, S., Bergwerk, M., Lipsitch, M., Leshem, E., Kahn, R., Lustig, Y., Cohen, C., Doolman, R., Ziv, A., Novikov, I., Rubin, C., Gimpelevich, I., Huppert, A., Rahav, G., Afek, A., & Kreiss, Y. (2021). Decreased Infectivity Following BNT162b2 Vaccination. SSRN Electronic Journal. https://doi.org/10.2139/ssrn.3815668

Laure Wynants. (2021, May 22). Reading covid-19 prediction studies. It never gets old. Oh wait... It does. Https://t.co/aFGi5HfmMn [Tweet]. @laure_wynants. https://twitter.com/laure_wynants/status/1396102628635971592

Health, A. G. D. of. (2021, March 13). COVID-19 vaccines ⁠–⁠ Is it true? [Text]. Australian Government Department of Health; Australian Government Department of Health. https://www.health.gov.au/initiatives-and-programs/covid-19-vaccines/is-it-true

China to only allow foreign visitors who have had Chinese-made vaccine. (2021, March 17). The Guardian. http://www.theguardian.com/world/2021/mar/17/china-to-allow-foreign-visitors-who-have-had-chinese-made-vaccine

Belluz, J. (2021, February 24). The scientist who’s been right about Covid-19 vaccines predicts what’s next. Vox. https://www.vox.com/22285256/covid-19-vaccine-predictions

Thomas Rhys Evans on Twitter: “🚨 Get Involved 🚨 #OpenScience practices and preregistration are all well and good, but do they help with applied and consultancy research? 🧵...” / Twitter. (n.d.). Retrieved June 27, 2021, from https://twitter.com/ThomasRhysEvans/status/1395752110088675328

Evans, T. R., Branney, P., Clements, A., & Hatton, E. (2021). Preregistration of Applied Research for Evidence-Based Practice [Preprint]. PsyArXiv. https://doi.org/10.31234/osf.io/snj2d

Metascience 2021. (n.d.). Retrieved June 27, 2021, from https://metascience2021.org/

Brian Nosek on Twitter: “The Metascience 2021 conference is open for registration and submitting proposals for events and lightning talks. Visit: Https://t.co/kyVrQa6HBm Some additional information in the thread. Https://t.co/abRtDT1t3r” / Twitter. (n.d.). Retrieved June 27, 2021, from https://twitter.com/BrianNosek/status/1397517047509274625

Radbruch, A., & Chang, H.-D. (2021). A long-term perspective on immunity to COVID. Nature. https://doi.org/10.1038/d41586-021-01557-z

Derrick, G. (2021). A year after lockdowns began, has research got any kinder? Nature. https://doi.org/10.1038/d41586-021-01579-7

Coronavirus vaccines may not work in some people. It’s because of their underlying conditions. (n.d.). Washington Post. Retrieved 26 June 2021, from https://www.washingtonpost.com/health/2021/05/18/immunocompromised-coronavirus-vaccines-response/

Thompson, M. G., Burgess, J. L., Naleway, A. L., Tyner, H. L., Yoon, S. K., Meece, J., Olsho, L. E. W., Caban-Martinez, A. J., Fowlkes, A., Lutrick, K., Kuntz, J. L., Dunnigan, K., Odean, M. J., Hegmann, K. T., Stefanski, E., Edwards, L. J., Schaefer-Solle, N., Grant, L., Ellingson, K., … Gaglani, M. (2021). Interim Estimates of Vaccine Effectiveness of BNT162b2 and mRNA-1273 COVID-19 Vaccines in Preventing SARS-CoV-2 Infection Among Health Care Personnel, First Responders, and Other Essential and Frontline Workers—Eight U.S. Locations, December 2020–March 2021. MMWR. Morbidity and Mortality Weekly Report, 70(13), 495–500. https://doi.org/10.15585/mmwr.mm7013e3

Covid vaccine: US trial of AstraZeneca jab confirms safety—BBC News. (n.d.). Retrieved June 26, 2021, from https://www.bbc.co.uk/news/health-56479462

Parry, H. M., Tut, G., Faustini, S., Stephens, C., Saunders, P., Bentley, C., Hilyard, K., Brown, K., Amirthalingam, G., Charlton, S., Leung, S., Chiplin, E., Coombes, N. S., Bewley, K. R., Penn, E. J., Rowe, C., Otter, A., Watts, R., D’Arcangelo, S., … Moss, P. (2021). BNT162b2 Vaccination in People Over 80 Years of Age Induces Strong Humoral Immune Responses with Cross Neutralisation of P.1 Brazilian Variant. SSRN Electronic Journal. https://doi.org/10.2139/ssrn.3816840

Moss, A. J., Rosenzweig, C., Jaffe, S. N., Gautam, R., Robinson, J., & Litman, L. (2021). Bots or inattentive humans? Identifying sources of low-quality data in online platforms [Preprint]. PsyArXiv. https://doi.org/10.31234/osf.io/wr8ds

Morrison, M., Merlo, K., & Woessner, Z. (2021). How to boost the impact of scientific conferences [Preprint]. PsyArXiv. https://doi.org/10.31234/osf.io/895gt

van Lange, P., & Rand, D. G. (2021). Human Cooperation and the Crises of Climate Change, COVID-19, and Misinformation [Preprint]. PsyArXiv. https://doi.org/10.31234/osf.io/6tpa8

Antico, L., & Corradi-Dell’Acqua, C. (2021). Far from the eyes, far from the heart. COVID-19 confinement dampened sensitivity to painful facial features. [Preprint]. PsyArXiv. https://doi.org/10.31234/osf.io/ewvp7

Qian, Z.-Y., Yuan, C., Zhou, J., Chen, S.-M., & Nie, S. (2021). Optimal control of complex networks with conformity behavior. ArXiv:2106.10607 [Physics]. http://arxiv.org/abs/2106.10607

Mentioned by Heather Staines

Zhao, H., Wu, D., Nguyen, A., Li, Y., Adão, R. C., Valkov, E., Patterson, G. H., Piszczek, G., & Schuck, P. (2021). Energetic and structural features of SARS-CoV-2 N-protein co-assemblies with nucleic acids. IScience, 24(6), 102523. https://doi.org/10.1016/j.isci.2021.102523

Study finds potentially druggable process of SARS-CoV-2 replication. (n.d.). Retrieved June 24, 2021, from https://phys.org/news/2021-06-potentially-druggable-sars-cov-replication.html

Qureshi, A. I., Baskett, W. I., Huang, W., Lobanova, I., Naqvi, S. H., & Shyu, C.-R. (2021). Re-infection with SARS-CoV-2 in Patients Undergoing Serial Laboratory Testing. Clinical Infectious Diseases, ciab345. https://doi.org/10.1093/cid/ciab345

Some conventions may be emerging in a new batch of personal knowledge management tools, or amenable to them; for the duration of this document, we'll refer to these tools as [[personal knowledge management]] tools, [[roam like]] or (preferred as of the time of writing) [[wiki like]].

It would be incredibly useful to have a list of these [[Roam Research like]] tools so that they can be documented as to what level of input they can/could take and remain compatible from text, to text+[[wiki links]], to the various flavors of markdown up to full HTML perhaps.

I know a handful are documented at indieweb.org/commonplace_book

V Shah, A. S., Gribben, C., Bishop, J., Hanlon, P., Caldwell, D., Wood, R., Reid, M., McMenamin, J., Goldberg, D., Stockton, D., Hutchinson, S., Robertson, C., McKeigue, P. M., Colhoun, H. M., & McAllister, D. A. (2021). Effect of vaccination on transmission of COVID-19: An observational study in healthcare workers and their households [Preprint]. Public and Global Health. https://doi.org/10.1101/2021.03.11.21253275

Calster, B. V., Wynants, L., Riley, R. D., Smeden, M. van, & Collins, G. S. (2021). Methodology over metrics: Current scientific standards are a disservice to patients and society. Journal of Clinical Epidemiology, 0(0). https://doi.org/10.1016/j.jclinepi.2021.05.018

Association, N. S. and P. (n.d.). AstraZeneca covid-19 vaccine may hinder blood clotting in rare cases. New Scientist. Retrieved 18 June 2021, from https://www.newscientist.com/article/2280446-astrazeneca-covid-19-vaccine-may-hinder-blood-clotting-in-rare-cases/

Woolf, K., McManus, I. C., Martin, C. A., Nellums, L. B., Guyatt, A. L., Melbourne, C., Bryant, L., Gogoi, M., Wobi, F., Al-Oraibi, A., Hassan, O., Gupta, A., John, C., Tobin, M. D., Carr, S., Simpson, S., Gregary, B., Aujayeb, A., Zingwe, S., … Pareek, M. (2021). Ethnic differences in SARS-CoV-2 vaccine hesitancy in United Kingdom healthcare workers: Results from the UK-REACH prospective nationwide cohort study [Preprint]. Public and Global Health. https://doi.org/10.1101/2021.04.26.21255788