- Feb 2023
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eprints.soton.ac.uk eprints.soton.ac.uk
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This paper is relevant to understanding
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Learning
- it introduces me to a number of new useful concepts
- cognitive advantage
- cultural network analysis
- more detailed understanding of memetics
- cultural epidemiology
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- Dec 2022
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eva.ecdc.europa.eu eva.ecdc.europa.eu
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The five Cs model
The five Cs model of vaccine acceptance is based on five factors that can affect an individual's vaccination behaviour: confidence, constraints, complacency, calculation, and collective responsibility.
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- Nov 2022
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Local file Local file
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The Association Between Rate and Severity of Exacerbations in ChronicObstructive Pulmonary Disease: An Application of a Joint Frailty-Logistic Model
The Association Between Rate and Severity of Exacerbations in Chronic Obstructive Pulmonary Disease: An Application of a Joint Frailty-Logistic Model
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- Aug 2022
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twitter.com twitter.com
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ReconfigBehSci [@SciBeh]. (2021, August 6). The pathologies of science Twitter are on full display in this thread featuring a non-expert blasting an epidemiologist for “stealing” an idea (a minor statistical insight) that is part of epidemiological basic understanding [Tweet]. Twitter. https://twitter.com/SciBeh/status/1423688923348299781
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- Apr 2022
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twitter.com twitter.com
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Dr Ellie Murray, ScD. (2021, September 19). We really need follow-up effectiveness data on the J&J one shot vaccine, but not sure what this study tells us. A short epi 101 on case-control studies & why they’re hard to interpret. 🧵/n [Tweet]. @EpiEllie. https://twitter.com/EpiEllie/status/1439587659026993152
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twitter.com twitter.com
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Adam Kucharski [@adamjkucharski]. (2021, October 26). Lots of useful international examples in the comments to this post 👇 And more from @cmmid_lshtm here: Https://github.com/cmmid [Tweet]. Twitter. https://twitter.com/adamjkucharski/status/1452905501684011008
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twitter.com twitter.com
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ReconfigBehSci [@SciBeh]. ‘RT @CAUSALab: Interested in #causalinference? Learn from Top Experts in the Field. Summer Courses Offered at the Harvard T.H. Chan Schoo…’. Tweet. Twitter, 20 December 2021. https://twitter.com/SciBeh/status/1483138177837715464.
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www.nature.com www.nature.com
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Tao, K., Tzou, P. L., Nouhin, J., Gupta, R. K., de Oliveira, T., Kosakovsky Pond, S. L., Fera, D., & Shafer, R. W. (2021). The biological and clinical significance of emerging SARS-CoV-2 variants. Nature Reviews Genetics, 1–17. https://doi.org/10.1038/s41576-021-00408-x
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twitter.com twitter.com
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Alessandro Vespignani. (2021, April 14). “Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil”—P.1 may be 1.7–2.4-fold more transmissible—Previous (non-P.1) infection provides 54–79% of the protection against infection with P.1 that it provides against non-P.1 lineages https://t.co/aUpL4YOFYo https://t.co/YniaLb9YiF [Tweet]. @alexvespi. https://twitter.com/alexvespi/status/1382370044374511621
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twitter.com twitter.com
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ReconfigBehSci. (2020, November 10). Now #scibeh2020: Presentation and Q&A with Martha Scherzer, senior risk communication and community engagement (RCCE) Consultant at the World Health Organization https://t.co/Gsr66BRGcJ [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1326148149870809089
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twitter.com twitter.com
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Stefan Simanowitz. (2021, March 18). 1/. The PM claims that the govt “stuck to the science like glue” But this is not true At crucial times they ignored the science or concocted pseudo-scientific justifications for their actions & inaction This thread, & the embedded threads, set them out https://t.co/dhXqkSL1bz [Tweet]. @StefSimanowitz. https://twitter.com/StefSimanowitz/status/1372460227619135493
Tags
- COVID-19
- epidemiology
- lang:en
- is:twitter
- transmission
- government policy
- misinformation
- vaccine
- pseudo-scientific justifications
- spread infection
- public health
- BBC
- asymptomatic
- Boris Johnson
- public communication
- media narrative
- behavioural fatigue
- care homes
- herd immunity
- reasoning
- delaying lockdown
Annotators
URL
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twitter.com twitter.com
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Adam Kucharski. (2020, December 13). I’ve turned down a lot of COVID-related interviews/events this year because topic was outside my main expertise and/or I thought there were others who were better placed to comment. Science communication isn’t just about what you take part in – it’s also about what you decline. [Tweet]. @AdamJKucharski. https://twitter.com/AdamJKucharski/status/1338079300097077250
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twitter.com twitter.com
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Kai Kupferschmidt. (2021, March 16). “I’m not here to give you the outcome of any scientific review”, says EMA director Emer Cooke at start of press conference on AstraZeneca vaccine safety. ‘I’m here to explain the steps in the process, what we’re doing, and when you can expect us to come to a conclusion.’ [Tweet]. @kakape. https://twitter.com/kakape/status/1371811123197001729
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twitter.com twitter.com
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JoHo. (2022, February 18). @PeteUK7 @kprather88 @BallouxFrancois I wrote an article about that tweet. He said he was going to respond. Instead he blocked me and deleted the tweet. Https://t.co/Gna9ubpae4 [Tweet]. @JHowardBrainMD. https://twitter.com/JHowardBrainMD/status/1494491992071360512
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twitter.com twitter.com
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Trevor Bedford. (2022, January 10). Given ~680k cases per day, this would in turn suggest 0.8% or 1% of the US being infected with SARS-CoV-2 every day. This would translate to perhaps 5% or 10% of individuals currently infected with SARS-CoV-2 in the US. 15/15 [Tweet]. @trvrb. https://twitter.com/trvrb/status/1480610448563060738
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twitter.com twitter.com
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Prof. Christina Pagel 🇺🇦. (2021, November 25). THREAD on the new variant B.1.1.529 summarising what is known from the excellent South African Ministry of Health meeting earlier today TLDR: So much uncertain but what is known is extremely worrying & (in my opinion) we should revise red list immediately. This is why: 1/16 [Tweet]. @chrischirp. https://twitter.com/chrischirp/status/1463885539619311616
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- Mar 2022
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twitter.com twitter.comTwitter1
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Health Nerd. (2022, January 14). People drastically underestimate how often an event with an 0.01% chance of happening will happen if you have millions of events [Tweet]. @GidMK. https://twitter.com/GidMK/status/1482093301113421824
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twitter.com twitter.com
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Shematologist, MD. (2021, August 7). Listen to @Schwarzenegger https://t.co/CpYJ5wwjFc [Tweet]. @acweyand. https://twitter.com/acweyand/status/1424080234241040387
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twitter.com twitter.com
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ReconfigBehSci. (2022, March 12). @rwjdingwall @mugecevik @RobFreudenthal it makes little sense to numerically compare this pandemic with all of the intervention that occurred directly with past ones where medicine and epidemiology where of a completely different standard to conclude that this one ‘wasn’t bad’. 1/2 [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1502681086819721223
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- Feb 2022
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blogs.bmj.com blogs.bmj.com
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Pak, C. (2022, February 8). Endemic Fatalism and Why It Won’t Resolve COVID-19. Medical Humanities. https://blogs.bmj.com/medical-humanities/?p=3280
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yourlocalepidemiologist.substack.com yourlocalepidemiologist.substack.com
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Jetelina, K. (2022, January 13). State of Affairs: Pediatrics and Omicron [Substack newsletter]. Your Local Epidemiologist. https://yourlocalepidemiologist.substack.com/p/state-of-affairs-pediatrics-and-omicron
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- Jan 2022
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www.medrxiv.org www.medrxiv.org
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Patone, M., Mei, X. W., Handunnetthi, L., Dixon, S., Zaccardi, F., Shankar-Hari, M., Watkinson, P., Khunti, K., Harnden, A., Coupland, C. A., Channon, K. M., Mills, N. L., Sheikh, A., & Hippisley-Cox, J. (2021). Risk of myocarditis following sequential COVID-19 vaccinations by age and sex (p. 2021.12.23.21268276). medRxiv. https://doi.org/10.1101/2021.12.23.21268276
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twitter.com twitter.com
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Best for Britain. (2022, January 1). Your 2022 reminder that Arnold Schwarzenegger is an absolute gem https://t.co/HmE81i7V0h [Tweet]. @BestForBritain. https://twitter.com/BestForBritain/status/1477209735841689606
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- Dec 2021
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twitter.com twitter.com
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A Marm Kilpatrick. (2021, November 24). How do we get broad immunity to SARS-CoV-2 that will protect against future variants? 2 studies (are there more?) suggest that vaccination followed by infection gives broader protection than infection followed by vaccination. @florian_krammer @profshanecrotty @GuptaR_lab https://t.co/rqdf6rE9ej [Tweet]. @DiseaseEcology. https://twitter.com/DiseaseEcology/status/1463391782742335491
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www.medrxiv.org www.medrxiv.org
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Colosi, E., Bassignana, G., Contreras, D. A., Poirier, C., Boëlle, P.-Y., Cauchemez, S., Yazdanpanah, Y., Lina, B., Fontanet, A., Barrat, A., & Colizza, V. (2021). Screening and vaccination against COVID-19 to minimize school closure (p. 2021.08.15.21261243). https://doi.org/10.1101/2021.08.15.21261243
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Mahase, E. (2021). Covid-19: Do vaccines work against omicron—and other questions answered. BMJ, 375, n3062. https://doi.org/10.1136/bmj.n3062
Tags
- COVID-19
- severity
- epidemiology
- testing
- Europe
- lang:en
- booster
- vaccine
- delta
- transmissibility
- variant
- work from home
- is:article
- travel ban
- mutation
- research
- antibody
- restrictions
- reinfection
- antiviral
- Africa
- hospitalization
- domestic measures
- UK
- EU
- infection rate
- modeling
- response
- treatment
- South Africa
- detection
- Omicron
- mask wearing
- data
- risk
- PCR
Annotators
URL
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www.axios.com www.axios.comAxios AM1
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Axios AM. (n.d.). Retrieved December 4, 2021, from https://www.axios.com/newsletters/axios-am-60b47701-a3e9-408f-b77a-0a752d789edf.html?utm_source=newsletter&utm_medium=email&utm_campaign=newsletter_axiosam&stream=top
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twitter.com twitter.com
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nference. (2021, November 27). Here is how B.1.1.529 (#Omicron #B11529) compares to Alpha, Beta, Gamma, Delta variants. Omicron has highest novel Spike mutations including striking cluster on the “crown” suggesting significant selection pressure & antigenic distinction from prior strains (Credits: Nference) https://t.co/4oZQbjhbG8 [Tweet]. @_nference. https://twitter.com/_nference/status/1464404770098229250
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- Nov 2021
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www.npr.org www.npr.org
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N, P, & R. (2021, November 27). Does omicron pose a risk to the vaccinated? Too early to tell, epidemiologist says. NPR. https://www.npr.org/2021/11/27/1059539509/too-early-to-tell-whether-omicron-poses-a-threat-to-vaccinated-epidemiologist-sa
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Castle, S., & Landler, M. (2021, November 24). A Claim of Herd Immunity Reignites Debate Over U.K. Covid Policy. The New York Times. https://www.nytimes.com/2021/11/24/world/europe/uk-virus-herd-immunity.html
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unherd.com unherd.com
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The Left’s Covid failure. (2021, November 23). UnHerd. https://unherd.com/2021/11/the-lefts-covid-failure/
Tags
- COVID-19
- epidemiology
- economy
- polarization
- socio-economic
- lang:en
- is:webpage
- transmission
- neoliberalism
- strategy
- income
- vaccine
- Western society
- public health
- science
- working class
- left-wing
- socialism
- intervention
- vaccination
- political affiliation
- government
- economics
- political spectrum
- social media
- right-wing
- mainstream
- policy
- lockdown
- COVID passport
Annotators
URL
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twitter.com twitter.com
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The Lancet Haematology. (2021, November 12). NEW Viewpoint by @Erik_Klok_MD, @MPaiMD, Menno Huisman & @ProfMakris discussing the epidemiology, pathophysiology, and optimal diagnostic and therapeutic management of vaccine-induced immune thrombotic thrombocytopenia #VITT #COVID19Vaccine https://thelancet.com/journals/lanhae/article/PIIS2352-3026(21)00306-9/fulltext https://t.co/9PbjaioA2T [Tweet]. @TheLancetHaem. https://twitter.com/TheLancetHaem/status/1459072729332826123
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twitter.com twitter.com
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Dr Ellie Murray, ScD. (2021, October 2). Everyone keeps talking about covid becoming endemic, but as I listen to the conversation, it’s becoming more & more clear to me that very few of you know what “endemic” means. So here’s a thread on how pandemics end. Https://t.co/uuYinUcynb [Tweet]. @EpiEllie. https://twitter.com/EpiEllie/status/1444088804961304581
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www.nature.com www.nature.com
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Cauchemez, S., & Bosetti, P. (2021). A reconstruction of early cryptic COVID spread. Nature. https://doi.org/10.1038/d41586-021-02989-3
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www.nature.com www.nature.com
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Pouwels, K. B., Pritchard, E., Matthews, P. C., Stoesser, N., Eyre, D. W., Vihta, K.-D., House, T., Hay, J., Bell, J. I., Newton, J. N., Farrar, J., Crook, D., Cook, D., Rourke, E., Studley, R., Peto, T. E. A., Diamond, I., & Walker, A. S. (2021). Effect of Delta variant on viral burden and vaccine effectiveness against new SARS-CoV-2 infections in the UK. Nature Medicine, 1–9. https://doi.org/10.1038/s41591-021-01548-7
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news.harvard.edu news.harvard.edu
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Writer, L. M. H. S. (2021, March 25). Harvard experts discuss the history of social distancing. Harvard Gazette. https://news.harvard.edu/gazette/story/2021/03/harvard-experts-discuss-the-history-of-social-distancing/
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twitter.com twitter.com
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ReconfigBehSci. (2021, November 2). interestingly the Singapore Health Minister also mentions “boosting through mild infections”—A concept that is currently generating much furore in the UK in the wake of the release of the JCVI minutes on child vaxx decisions 1/n [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1455445587910922240
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- Oct 2021
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www.dailymail.co.uk www.dailymail.co.uk
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UK’s daily Covid deaths hit SEVEN-MONTH high of 223 while cases jump 13% in a week to 43,738 | Daily Mail Online. (n.d.). Retrieved October 25, 2021, from https://www.dailymail.co.uk/news/article-10108203/UKs-daily-Covid-deaths-hit-SEVEN-MONTH-high-223-cases-jump-13-week-43-738.html
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www.huffingtonpost.co.uk www.huffingtonpost.co.uk
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These Are The Main Covid Symptoms – But The Government Website Says Otherwise. (2021, September 23). HuffPost UK. https://www.huffingtonpost.co.uk/entry/covid-symptoms-delta-variant-government_uk_614c5ffce4b098483a72a22b
Tags
- advice
- COVID-19
- infection
- epidemiology
- lang:en
- government
- is:news
- UK
- dominant strain
- symptom
- headache
- sneezing
- runny nose
- Delta variant
- sore throat
Annotators
URL
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www.biorxiv.org www.biorxiv.org
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Rono, E. K. (2021). Covid-19 genomic analysis reveals clusters of emerging sublineages within the delta variant [Preprint]. Genomics. https://doi.org/10.1101/2021.10.08.463334
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www.theguardian.com www.theguardian.com
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Covid booster shots important to stop infection, finds English study | Coronavirus | The Guardian. (n.d.). Retrieved October 14, 2021, from https://www.theguardian.com/world/2021/oct/14/covid-booster-shots-important-to-stop-infection-finds-english-study
Tags
- COVID-19
- epidemiology
- risk
- lang:en
- is:news
- UK
- booster
- breakthrough infection
- transmission
- data analysis
- vaccine
- science
- research
- protection
Annotators
URL
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elemental.medium.com elemental.medium.com
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The Death Rate of Covid-19 in Developing Countries | by Gideon M-K; Health Nerd | Oct, 2021 | Elemental. (n.d.). Retrieved October 7, 2021, from https://elemental.medium.com/the-death-rate-of-covid-19-in-developing-countries-cc17a55c73cd
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docs.google.com docs.google.com
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Understanding COVID-19 Registration Form. (n.d.). Google Docs. Retrieved March 31, 2021, from https://docs.google.com/forms/d/e/1FAIpQLScrC4krKVHcSm_Wi2VcXcGHa4F8l3cilL2xhbB62etcK4sy4w/viewform?usp=embed_facebook
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- Sep 2021
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www.theguardian.com www.theguardian.com
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‘Calculated risk’: Ardern gambles as New Zealand Covid restrictions eased | New Zealand | The Guardian. (n.d.). Retrieved September 23, 2021, from https://www.theguardian.com/world/2021/sep/22/calculated-risk-ardern-gambles-as-new-zealand-covid-restrictions-eased
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unherd.com unherd.com
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Are we heading for another winter lockdown? - UnHerd. (n.d.). Retrieved September 14, 2021, from https://unherd.com/2021/09/are-we-heading-for-another-winter-lockdown/
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sciencebasedmedicine.org sciencebasedmedicine.org
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Dumpster diving in the VAERS database to find more COVID-19 vaccine-associated myocarditis in children | Science-Based Medicine. (n.d.). Retrieved September 14, 2021, from https://sciencebasedmedicine.org/dumpster-diving-in-vaers-doctors-fall-into-the-same-trap-as-antivaxxers/
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www.science.org www.science.org
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Kraemer, M. U. G., Hill, V., Ruis, C., Dellicour, S., Bajaj, S., McCrone, J. T., Baele, G., Parag, K. V., Battle, A. L., Gutierrez, B., Jackson, B., Colquhoun, R., O’Toole, Á., Klein, B., Vespignani, A., COVID-19 Genomics UK (COG-UK) Consortium‡, Volz, E., Faria, N. R., Aanensen, D. M., … Pybus, O. G. (2021). Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence. Science, 373(6557), 889–895. https://doi.org/10.1126/science.abj0113
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- Aug 2021
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www.politico.com www.politico.com
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Inside America’s Covid-reporting breakdown—POLITICO. (n.d.). Retrieved August 23, 2021, from https://www.politico.com/news/2021/08/15/inside-americas-covid-data-gap-502565
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twitter.com twitter.com
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Kai Kupferschmidt on Twitter: “One of the most important things I was looking for in reporting on #SARSCoV2 evolution was a way of making sense of all the virus variants, putting them in some framework. And one of the most useful things I found for that is this antigenic map. It’s worth explaining a bit: Https://t.co/miO8Kh9w9e” / Twitter. (n.d.). Retrieved August 22, 2021, from https://twitter.com/kakape/status/1428650961652916230?s=20
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www.theguardian.com www.theguardian.com
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We shouldn’t be giving Covid boosters while millions wait for a first dose | Andrew Pollard and Seth Berkley | The Guardian. (n.d.). Retrieved August 17, 2021, from https://www.theguardian.com/commentisfree/2021/aug/13/covid-boosters-dose-vaccine
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podcasts.apple.com podcasts.apple.com
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Apple Podcasts. “The Ezra Klein Show: The Good and Bad News About the Delta Variant on Apple Podcasts.” Accessed August 13, 2021. https://podcasts.apple.com/us/podcast/the-good-and-bad-news-about-the-delta-variant/id1548604447?i=1000531189768.
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www.cdc.gov www.cdc.gov
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Cavanaugh, Alyson M. “Reduced Risk of Reinfection with SARS-CoV-2 After COVID-19 Vaccination — Kentucky, May–June 2021.” MMWR. Morbidity and Mortality Weekly Report 70 (2021). https://doi.org/10.15585/mmwr.mm7032e1.
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Crook, H., Raza, S., Nowell, J., Young, M., & Edison, P. (2021). Long covid—Mechanisms, risk factors, and management. BMJ, n1648. https://doi.org/10.1136/bmj.n1648
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www.thebulwark.com www.thebulwark.com
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What Is “Natural Immunity”? And Why Should You Get the Vaccine Even if You Already Had COVID? - The Bulwark. (n.d.). Retrieved August 11, 2021, from https://www.thebulwark.com/what-is-natural-immunity-and-why-should-you-get-the-vaccine-even-if-you-already-had-covid/
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twitter.com twitter.com
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Céline Gounder, MD, ScM, FIDSA on Twitter: “1/ PROFOUNDLY DISTURBING clips from a town hall with Arkansas @AsaHutchinson. Q: What’s in the vaccine? A: Here are full ingredient lists: Pfizer: Https://t.co/ZgpaqcIlzg Moderna: Https://t.co/j5uf4uErLB J&J: https://t.co/qsjEO8s4gg https://t.co/OR9sSANR7x” / Twitter. (n.d.). Retrieved August 11, 2021, from https://twitter.com/celinegounder/status/1423002451460907009
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www.nature.com www.nature.com
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Callaway, E. (2021). Remember Beta? New data reveal variant’s deadly powers. Nature, d41586-021-02177–3. https://doi.org/10.1038/d41586-021-02177-3
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www.medrxiv.org www.medrxiv.org
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Fisman, D. N., & Tuite, A. R. (2021). Progressive Increase in Virulence of Novel SARS-CoV-2 Variants in Ontario, Canada. MedRxiv, 2021.07.05.21260050. https://doi.org/10.1101/2021.07.05.21260050
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www.theglobeandmail.com www.theglobeandmail.com
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Fallis, B. (n.d.). Opinion: A vaccine-only strategy won’t prevent a fourth wave of COVID-19 - The Globe and Mail. Retrieved 7 August 2021, from https://www.theglobeandmail.com/opinion/article-a-vaccine-only-strategy-wont-prevent-a-fourth-wave-of-covid-19/
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www.youtube.com www.youtube.com
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intuitive EPI. (n.d.). intuitive EPI - Table 2 Fallacy (Part 1). Retrieved August 5, 2021, from https://www.youtube.com/watch?v=ufwRaWQmxDE
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- Jul 2021
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Why are fully vaccinated people testing positive for Covid? | Financial Times. (n.d.). Retrieved July 28, 2021, from https://www.ft.com/content/0f11b219-0f1b-420e-8188-6651d1e749ff
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www.livemint.com www.livemint.com
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Thorough and well written article
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www.theguardian.com www.theguardian.com
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If Covid-19 is a seasonal virus, why is it spreading during the summer? | Francois Balloux | The Guardian. (n.d.). Retrieved July 19, 2021, from https://www.theguardian.com/commentisfree/2021/jul/16/covid-19-seasonal-virus-spreading-during-summer-pandemic
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hongkongfp.com hongkongfp.com
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Covid-19: Hong Kong study shows BioNTech vaccines create 10 times more antibodies than Sinovac | Hong Kong Free Press HKFP. (n.d.). Retrieved July 18, 2021, from https://hongkongfp.com/2021/07/16/covid-19-hong-kong-study-shows-biontech-vaccines-create-10-times-more-antibodies-than-sinovac/
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www.researchsquare.com www.researchsquare.com
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Effectiveness of the BNT162b2 mRNA COVID-19 Vaccine in Pregnancy. (2021, July 12). https://doi.org/10.21203/rs.3.rs-665725/v1
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elifesciences.org elifesciences.org
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Toor, J., Echeverria-Londono, S., Li, X., Abbas, K., Carter, E. D., Clapham, H. E., Clark, A., de Villiers, M. J., Eilertson, K., Ferrari, M., Gamkrelidze, I., Hallett, T. B., Hinsley, W. R., Hogan, D., Huber, J. H., Jackson, M. L., Jean, K., Jit, M., Karachaliou, A., … Gaythorpe, K. A. (2021). Lives saved with vaccination for 10 pathogens across 112 countries in a pre-COVID-19 world. ELife, 10, e67635. https://doi.org/10.7554/eLife.67635
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arxiv.org arxiv.org
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Herrera-Diestra, J. L., Tildesley, M., Shea, K., & Ferrari, M. (2021). Network structure and disease risk for an endemic infectious disease. ArXiv:2107.06186 [Physics, q-Bio]. http://arxiv.org/abs/2107.06186
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www.cbc.ca www.cbc.ca
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What the World Health Organization really said about mixing COVID-19 vaccines | CBC News. (n.d.). Retrieved July 15, 2021, from https://www.cbc.ca/news/health/covid-19-vaccine-mixing-and-matching-who-1.6101047?__vfz=medium%3Dsharebar
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The number of lives lost around the world over the past year and a half is about equal to the population of Los Angeles or the nation of Georgia. It is three times the number of victims killed in traffic accidents around the globe per year.
The takeaway: Global COVID-19 deaths over the past year and a half are 3X more than the annual deaths due to traffic accidents and roughly equal to the population of the city of Los Angeles or the country of Georgia.
The claim: Covid-19 deaths are approximately equal to the population of Los Angeles or the nation of Georgia and are three times the global traffic accident death.
The evidence:
The global number of deaths due to COVID as reported to the World Health Organization (WHO) on July 8, 2021 is 4,002,209 (1). The estimated population of the city of Los Angeles in 2019 was 3,979,576 (2). The estimated population of Los Angeles county in 2019 was 10,039,107 (2). The population of the nation of Georgia is 3,979,549 (3). Per WHO data from 2018, 1.35 million are killed annually by traffic accidents around the world (4).
Global COVID deaths are approximately equal to the population of the city of Los Angeles or nation of Georgia. Globally, COVID deaths are 3X the number of global traffic accident deaths.
Sources:
3) https://worldpopulationreview.com/countries/georgia-population
4) https://www.cdc.gov/injury/features/global-road-safety/index.html
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phirephoenix.com phirephoenix.com
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Amidst the global pandemic, this might sound not dissimilar to public health. When I decide whether to wear a mask in public, that’s partially about how much the mask will protect me from airborne droplets. But it’s also—perhaps more significantly—about protecting everyone else from me. People who refuse to wear a mask because they’re willing to risk getting Covid are often only thinking about their bodies as a thing to defend, whose sanctity depends on the strength of their individual immune system. They’re not thinking about their bodies as a thing that can also attack, that can be the conduit that kills someone else. People who are careless about their own data because they think they’ve done nothing wrong are only thinking of the harms that they might experience, not the harms that they can cause.
What lessons might we draw from public health and epidemiology to improve our privacy lives in an online world? How might we wear social media "masks" to protect our friends and loved ones from our own posts?
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Murray, E. (2021, April 20). I’m an epidemiologist. Here’s what I got wrong about covid. Washington Post. https://www.washingtonpost.com/outlook/2021/04/20/epidemiology-covid-self-criticism/
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Safi, M. (2021, April 21). India’s shocking surge in Covid cases follows baffling decline. The Guardian. https://www.theguardian.com/world/2021/apr/21/india-shocking-surge-in-covid-cases-follows-baffling-decline
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www.nature.com www.nature.com
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Korman, Maria, Vadim Tkachev, Cátia Reis, Yoko Komada, Shingo Kitamura, Denis Gubin, Vinod Kumar, and Till Roenneberg. ‘COVID-19-Mandated Social Restrictions Unveil the Impact of Social Time Pressure on Sleep and Body Clock’. Scientific Reports 10, no. 1 (17 December 2020): 22225. https://doi.org/10.1038/s41598-020-79299-7.
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- Mar 2021
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His answer was that nature had endowed humans with reason (“logos”) and that, hence, the function of humans is to think and, more specifically, to participate — by way of thinking — in the divine thought that organizes the cosmos.
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Tags
- second wave
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www.theatlantic.com www.theatlantic.com
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Serhan, Y. (2020, December 8). Vaccine Nationalism Is Doomed to Fail. The Atlantic. https://www.theatlantic.com/international/archive/2020/12/vaccine-nationalism-doomed-fail/617323/
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mailchi.mp mailchi.mp
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🔥 Your COVID Roundup, Week #31. (n.d.). Retrieved December 9, 2020, from https://mailchi.mp/8338eb3924db/your-covid-roundup-7106445?e=feb8bf1ac8
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www.whitehouse.gov www.whitehouse.gov
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According to the best estimates from the Centers for Disease Control and Prevention, 99.997 percent of individuals aged 19 and younger who contract coronavirus make a full recovery, 99.98 percent of those aged 20 to 49 make a full recovery, and 99.5 percent aged 50 to 69 fully recover.
The takeaway: >99% of people age 0-69 infected with SARS-CoV-2 survive COVID based on the CDC's current best estimate of infection fatality ratio. A subset of those infected will suffer from continued symptoms even though they did not die from COVID.
The claim: Greater than 99% of people age 0-69 fully recover from COVID-19.
The evidence: This numbers align with the CDC's current best estimate of the infection fatality ratio (1). Infection fatality ratio is the number of people that die from a disease divided by the number of people who get the disease. These numbers do not account for people with symptoms such as lung damage, chronic fatigue, and mental illness which may follow a COVID infection (2, 3).
In a study of 143 hospitalized patients from Italy after an average of 60.3 days, only 12.6% were symptom free (4). Per Mayo Clinic guidelines, long term effects can occur in those with mild symptoms but most often occur in severe cases (5). Mental health problems were diagnosed 14-90 days after COVID in 18.1% of COVID patients studied (3).
A more accurate estimate of the number of people that fully recover may be obtained if the number of people who recovered without hospitalization is used. The numbers presented are the CDC's current best estimate of the number of people that survive COVID not the number of people that fully recover.
Sources:
1) https://www.cdc.gov/coronavirus/2019-ncov/hcp/planning-scenarios.html
2) https://www.nature.com/articles/d41586-020-02598-6
3) https://www.thelancet.com/journals/lanpsy/article/PIIS2215-0366(20)30462-4/fulltext
4) https://jamanetwork.com/journals/jama/fullarticle/2768351/
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- Nov 2020
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abcnews.go.com abcnews.go.com
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Gov. Kristi Noem defended her hands-off approach to managing the deadly COVID-19 pandemic while addressing lawmakers earlier this week and called mandatory stay-at home orders "useless" in helping lower the spread.
Take away: Lower COVID-19 spread occurred after stay-at home orders were issued. Room for debate exists on how restrictive lockdowns should be.
The claim: Mandatory stay-at home orders are "useless" in helping lower the spread of SARS-CoV-2.
The evidence: Two publications showed that lower COVID-19 spread occurred after stay-at home orders were issued (1, 2). Hospitalizations were lower than predicted exponential growth rates after implementation of stay-at home orders (3). Some caveats to consider include that it is impossible to tease apart the effects of the stay-at home orders from other measure implemented simultaneously with stay-at home orders such as increased hygiene measures, social distancing guidelines, and school closures. It is also impossible to conclusively state that the effect is from the stay-at home order and not the natural progression of the disease.
The comparison between Illinois with stay-at home orders and Iowa without stay-at home orders resulted in an estimated 217 additional COVID-19 cases in Iowa over the course of a month (2). This small number raises the question, "are stay-at home orders worth it?" It is important to remember that comparison of Iowa and Illinois is the comparison of two social distancing strategies. Stay-at home orders close everything and then write the exceptions that can remain open. Iowa took the approach of leaving everything open except what the government choose to close (4). Some businesses in Iowa were still closed and many federal guidelines were still followed. A negative control showing disease progression without any mitigation measures does not exist in published literature.
Sources:
1 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7246016/
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www.nbcnews.com www.nbcnews.com
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On every measure — new infections, hospitalizations, and deaths — the U.S. is headed in the wrong direction
The takeaway: Though COVID-19 cases are at a record high, the number of deaths from COVID-19 has not followed the steep rise in cases. An increase in the number of deaths may be reported later as deaths lag cases by several weeks.
The claim: On every measure - new infections, hospitalizations, and deaths - the U.S. is headed in the wrong direction.
The evidence: New COVID infections in the US are the highest they have ever been with a 7-day moving average of 104,417 cases/day (1). The number of deaths in the US is similar to the number of deaths in August, lower than the number of deaths in the spring and higher than the number of deaths in the summer (2). A slight increase was seen in the number of deaths for the first two weeks in October followed by a slight decline which may change as more data is added (3). The number of emergency department visits for coronavirus like symptoms is on an upward trajectory nationwide (4). The CDC states "At least one indicator used to monitor COVID-19 activity is increasing in each of the ten HHS regions, and many regions are reporting increases in multiple indicators" (3).
Though COVID-19 cases are at a record high, the number of deaths from COVID-19 has not followed the steep rise in cases. An increase in the number of deaths may be reported later as deaths lag cases by several weeks.
Sources:
1) https://covid.cdc.gov/covid-data-tracker/#trends_dailytrendscases
2) https://covid.cdc.gov/covid-data-tracker/#trends_dailytrendsdeaths
3) https://www.cdc.gov/coronavirus/2019-ncov/covid-data/covidview/index.html
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www.newsweek.com www.newsweek.com
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How can we better protect nursing home residents? This is the most vulnerable population.
The takeaway: Nursing home residents are the most vulnerable population though others with similar age and comorbidities may be at a similar risk.
The claim: Nursing home residents are the most vulnerable population.
The evidence: Older, more vulnerable people live in nursing homes (1). The setting is also communal which leads to rapid spread once the virus is in the home (1). The CDC reports 61,765 deaths (2, accessed 11/2/2020). A significant percentage of the deaths occurred in nursing homes which makes sense because older people live in the homes often with multiple comorbidities (3). Probability of death from COVID-19 increases with age and comorbidity (4-5). COVID spreads easier inside than outside (6).
Considering all of these factors, nursing home residents are the most vulnerable population. Others with similar age and comorbidities may be at a similar risk if they interact with many people.
Sources:
1) https://www.cdc.gov/coronavirus/2019-ncov/need-extra-precautions/people-in-nursing-homes.html
2) https://data.cms.gov/stories/s/COVID-19-Nursing-Home-Data/bkwz-xpvg
3) https://onlinelibrary.wiley.com/doi/10.1111/jgs.16784
5) https://www.cdc.gov/nchs/nvss/vsrr/covid_weekly/index.htm#Comorbidities
6) https://www.cdc.gov/coronavirus/2019-ncov/daily-life-coping/deciding-to-go-out.html
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- Oct 2020
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www.medrxiv.org www.medrxiv.org
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We find that COVID-19 has likely become the leading cause of death (surpassing unintentional overdoses) among young adults aged 25-44 in some areas of the United States during substantial COVID-19 outbreaks.
The takeaway: During the peak of infections during large outbreaks, COVID-19 deaths in age group 25-44 is higher than drug overdose deaths.
The claim: COVID-19 has likely become the leading cause of death in age group 25-44.
The evidence: This article compares COVID-19 deaths to opioid deaths during 2018. When the hardest hit areas are combined and areas not hit are excluded, the number of COVID-19 deaths is five deaths more than the opioid deaths during the same period in 2018. Unintentional injuries are the leading cause of death in the age group 25-44 (1-2). In 2018, opioid overdose resulted in 24,253 deaths in the age group of 25-44 in the United States (3). Transportation fatal injuries for the age group 25-44 in 2018 was 12,904 (4). In 2020, deaths from all causes for age group 25-44 is 124,736 with 5,911 directly attributable to COVID-19 (5, accessed 10/28/2020).
COVID-19 was briefly the leading cause of death in the hardest hit areas during the peak of the epidemic for age group 25-44 if unintentional injuries is broken into subcategories.
Sources: 1 https://www.cdc.gov/injury/wisqars/animated-leading-causes.html
2 https://www.cdc.gov/nchs/data/nvsr/nvsr68/nvsr68_06-508.pdf
3 https://www.cdc.gov/mmwr/volumes/69/wr/mm6911a4.ht m
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www.bbc.co.uk www.bbc.co.uk
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Covid: Scots told to prepare for “digital Christmas.” (2020, October 22). BBC News. https://www.bbc.co.uk/news/uk-scotland-54643340
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www.theguardian.com www.theguardian.com
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Lombardy coronavirus cases more than double in one day to 4,126. (2020, October 21). The Guardian. http://www.theguardian.com/world/2020/oct/21/lombardy-coronavirus-cases-more-than-double-in-one-day-to-4126
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www.ages.at www.ages.at
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Epidemiologische Abklärung Covid 19. (n.d.). AGES - Österreichische Agentur Für Gesundheit Und Ernährungssicherheit. Retrieved October 28, 2020, from https://www.ages.at/themen/krankheitserreger/coronavirus/epidemiologische-abklaerung-covid-19/
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www.youtube.com www.youtube.com
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David Spiegelhalter and False Positives. (2020, October 14). https://www.youtube.com/watch?v=XmiEzi54lBI&feature=youtu.be
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www.bmj.com www.bmj.com
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Smith, G. D., Blastland, M., & Munafò, M. (2020). Covid-19’s known unknowns. BMJ, 371. https://doi.org/10.1136/bmj.m3979
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outbreak.info outbreak.info
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Outbreak.info. (n.d.). Outbreak.Info. Retrieved October 25, 2020, from https://outbreak.info/
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jamanetwork.com jamanetwork.com
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Woolf, S. H., Chapman, D. A., Sabo, R. T., Weinberger, D. M., Hill, L., & Taylor, D. D. H. (2020). Excess Deaths From COVID-19 and Other Causes, March-July 2020. JAMA, 324(15), 1562. https://doi.org/10.1001/jama.2020.19545
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www.thelancet.com www.thelancet.com
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Health, T. L. P. (2020). COVID-19 in Spain: A predictable storm? The Lancet Public Health, 0(0). https://doi.org/10.1016/S2468-2667(20)30239-5
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twitter.com twitter.comTwitter2
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Paul Edbrooke MP on Twitter. (n.d.). Twitter. Retrieved October 21, 2020, from https://twitter.com/paul4frankston/status/1317362188097519616
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Dr Duncan Robertson on Twitter. (n.d.). Twitter. Retrieved October 12, 2020, from https://twitter.com/Dr_D_Robertson/status/1314544108547997703
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twitter.com twitter.com
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Maarten van Smeden on Twitter. (n.d.). Twitter. Retrieved October 18, 2020, from https://twitter.com/MaartenvSmeden/status/1316423658106216454
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www.nature.com www.nature.com
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Schiermeier, Q., Else, H., Mega, E. R., Padma, T. V., & Gaind, N. (2020). What it’s really like to do science amid COVID-19. Nature. https://doi.org/10.1038/d41586-020-02815-2
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www.newscientist.com www.newscientist.com
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Vaughan, A. (n.d.). Exclusive: Concerns raised about vital UK covid-19 infection survey. New Scientist. Retrieved October 18, 2020, from https://www.newscientist.com/article/2256942-exclusive-concerns-raised-about-vital-uk-covid-19-infection-survey/
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www.idsociety.org www.idsociety.org
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“Herd Immunity” is Not an Answer to a Pandemic. (n.d.). Retrieved October 17, 2020, from https://www.idsociety.org/news--publications-new/articles/2020/herd-immunity-is-not-an-answer-to-a-pandemic/
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www.nytimes.com www.nytimes.com
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Leatherby, L. (2020, October 15). U.S. Virus Cases Climb Toward a Third Peak. The New York Times. https://www.nytimes.com/interactive/2020/10/15/us/coronavirus-cases-us-surge.html
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erj.ersjournals.com erj.ersjournals.com
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Martin, G. P., Sperrin, M., & Sotgiu, G. (2020). Performance of Prediction Models for Covid-19: The Caudine Forks of the External Validation. European Respiratory Journal. https://doi.org/10.1183/13993003.03728-2020
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twitter.com twitter.com
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Health Nerd on Twitter. (n.d.). Twitter. Retrieved October 17, 2020, from https://twitter.com/GidMK/status/1316511734115385344
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www.newscientist.com www.newscientist.com
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Vaughan, A. (n.d.). England & Wales had most excess deaths in Europe’s covid-19 first wave. New Scientist. Retrieved October 16, 2020, from https://www.newscientist.com/article/2256986-england-wales-had-most-excess-deaths-in-europes-covid-19-first-wave/
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www.theguardian.com www.theguardian.com
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Ending Covid-19 via herd immunity is “a dangerous fallacy.” (2020, October 14). The Guardian. http://www.theguardian.com/world/2020/oct/14/ending-covid-19-via-herd-immunity-is-a-dangerous-fallacy
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www.nature.com www.nature.com
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The events did not seem to trigger spikes in infections
The takeaway: An increase in COVID-19 infections occurred nationwide in the time following protests. Due to simultaneous occurrence of non-uniform lifting of stay-at home orders, Memorial Day, and Black Lives Matter protests, it is not possible to conclusively determine the exact cause of the nationwide COVID-19 case spike after June 9, 2020.
The claim: Black Lives Matter protests did not seem to trigger a spike of COVID-19 infections.
The evidence: This statement is based on an article written in IZA Institute of Labor Economics discussion paper series (1). The article, titled “Black Lives Matter Protests, Social Distancing, and COVID-19” states that overall, stay-at home orders were better followed during protests based on cell phone data. Yet it still shows a steady increase in COVID-19 cases (Figure 6, 1). Additionally, The data from this report stops after June 9th while riots continued and COVID-19 cases across the country spiked (2, 3). As other factors such as Memorial Day weekend, and opening of economies occurred in a non-uniform fashion during the same time as protests, it is not possible to determine the exact cause of the nationwide spike in COVID-19 cases.
The abstract of the IZA report was updated August 2020 to read: "We conclude that predictions of population-level spikes in COVID-19 cases from Black Lives Matter protests were too narrowly conceived because of failure to account for non-participants’ behavioral responses to large gatherings." (4). The non-participant response was explained by this statement in the abstract: "Event-study analyses provide strong evidence that net stay-at-home behavior increased following protest onset." To put this in plain language: non-protestors stayed home more during protests which resulted in a steady increase in COVID-19 instead of a spike. The effect of mask wearing by protestors was not mentioned in the report.
Only anecdotal evidence and one small study (20 participants) were found showing protestors wearing masks (5-9). No scientific publications with the direct effect of the masks on the spread of COVID-19 during protests were found.
Valentine et al examined eight cities with tens of thousands of protestors (1, 10). Cities were chosen which had economies open at least 30 days prior to the protests to control for an expected spike when economies open. They found that six out of eight cities examined had significant abnormal positive growth of COVID-19 infection rate following the Black Lives Matter protests (10). All cities studied had abnormal positive infection rate growth.
Protests resulted in abnormal positive infection growth rates in all eight cities with stay at home orders lifted for at least 30 days prior to protests (10). A spike in COVID-19 cases nationwide happened after June 9th (3). Due to simultaneous occurrence of non-uniform lifting of stay-at home orders, Memorial Day, and Black Lives Matter protests, it is not possible to conclusively determine the exact cause of the nationwide COVID-19 case spike after June 9, 2020.
Sources:
1 http://ftp.iza.org/dp13388.pdf
2 https://www.theguardian.com/us-news/2020/jun/07/george-floyd-protests-enter-third-week
3 https://covid.cdc.gov/covid-data-tracker/#trends_dailytrendscases
4 https://www.nber.org/papers/w27408
6 https://www.vox.com/2020/6/26/21300636/coronavirus-pandemic-black-lives-matter-protests
8 https://www.geekwire.com/2020/testing-shows-no-big-spike-covid-19-infections-due-protests-wear-mask/
9 https://assets.researchsquare.com/files/rs-68862/v1/79db6827-52c3-4e94-afa0-679d15a89049.pdf
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twitter.com twitter.com
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Seth Abramson on Twitter. (n.d.). Twitter. Retrieved October 14, 2020, from https://twitter.com/SethAbramson/status/1315856349964759040
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medium.com medium.com
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Feldman, J. (2020, October 11). The “herd immunity strategy” isn’t part of a scientific debate about COVID-19. Medium. https://medium.com/@jmfeldman/the-herd-immunity-strategy-isnt-part-of-a-scientific-debate-about-covid-19-abddf6bc7c13
Tags
- agenda
- opinion
- COVID-19
- epidemiology
- lang:en
- campaign
- strategy
- debate
- is:blog
- discussion
- politics
- herd immunity
- accountability
- policy
Annotators
URL
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www.acpjournals.org www.acpjournals.org
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In comparison, the ratio is approximately 2.5 times greater than the estimated IFR for seasonal influenza
Take away:
If correct numerators and denominators are used, COVID-19 is at least 10 times as deadly as seasonal influenza.
The claim:
The Infection Fatality Ratio for COVID-19 is “approximately 2.5 times higher than the estimated IFR for seasonal influenza.”
The evidence:
Blackburn et al. report an infection fatality ratio among community-living adults of 0.26% (1). If institutionalized adults had been included the ratio would be higher, likely approximating the 0.6% mortality rate among exposed individuals readily calculated by combining official death tolls, the known 30% undercount (2), and a definitive CDC study that found 10 times as many people have been exposed to the novel coronavirus than are reported as cases (3). Among the elderly, Blackburn et al. calculate COVID-19 is 2.5 times deadlier than seasonal flu. This is clearly an underestimate:
1) Blackburn et al. use CDC estimates of case-fatality rates calculated on the basis of all Americans, including the institutionalized, not limited to much healthier community-dwellers.
2) The seasonal influenza case fatality rates reported by the CDC, including the often cited 0.1% overall, are for symptomatic cases. Their denominators are estimated by using the reported number of influenza hospitalizations to guess the burden of clinical illness (4). But antibody studies show that 65%-85% of people infected with influenza never develop symptoms (5). The 0.6% mortality rate calculated here for SARS-CoV-2-exposed individuals is 6 times higher than the 0.1% usually cited for seasonal influenza. Given the overestimation of commonly accepted influenza mortality rates due to failure to take asymptomatic infections into account, SARS-CoV-2 can be seen to be not 2.5 times, or even 6 times, but at least 10 times as lethal as seasonal flu.
Sources:
1 http://www.acpjournals.org/doi/10.7326/M20-5352
2 https://jamanetwork.com/journals/jamainternalmedicine/fullarticle/2767980
3 https://jamanetwork.com/journals/jamainternalmedicine/fullarticle/2768834
4 https://www.cdc.gov/flu/about/burden/how-cdc-estimates.htm
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www.bbc.co.uk www.bbc.co.uk
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Gallagher, J. (2020, October 9). Covid cases increase rapidly as next steps planned. BBC News. https://www.bbc.com/news/health-54477618
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twitter.com twitter.com
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Dominique Heinke on Twitter. (n.d.). Twitter. Retrieved October 12, 2020, from https://twitter.com/Epi_D_Nique/status/1314753256556552192
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www.thelancet.com www.thelancet.com
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Trias-Llimós, S., Alustiza, A., Prats, C., Tobias, A., & Riffe, T. (2020). The need for detailed COVID-19 data in Spain. The Lancet Public Health, 0(0). https://doi.org/10.1016/S2468-2667(20)30234-6
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www.rt.com www.rt.com
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A scientific review of the science behind lockdown concludes the policy was a MISTAKE & will have caused MORE deaths from Covid-19
Take Away: The new scientific paper confirms earlier modeling work and should not be interpreted as a detailed prediction for future deaths due to the ongoing pandemic.
The Claim: "A scientific review of the science behind lockdown concludes the policy was a MISTAKE & will have caused MORE deaths from Covid-19"
The Evidence: The scientific process involves replication and confirmation of experiments and studies. A new paper replicates and expands on an early modeling study of the COVID-19 pandemic in England (1). Their findings support the earlier results. However, there are limitations to the replication paper, which does not accurately reflect the current state of the pandemic response and does not make detailed predictions for a second wave of infections and deaths.
A recent expert response to the paper further explains (2):
"It needs to be stressed that all the simulations assume that interventions are only in place for 3 months (18th April – 18th July) and then completely relaxed. This gives rise to a strange set of scenarios where a second wave is allowed to progress in an uncontrolled manner."
“It is this that leads to the counter-intuitive headline finding “that school closures would result in more overall covid-19 deaths than no school closures” – actually what the authors find is that a short period of intense lock-down (including the closure of schools) leads to a large second wave if it is allowed to run with no controls. To be fair the authors do highlight this in the paper, but it is not in the reported press release." -Prof Matt Keeling, Professor of Populations and Disease, University of Warwick
Sources:
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www.bmj.com www.bmj.com
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The model predicted that school closures and isolation of younger people would increase the total number of deaths, albeit postponed to a second and subsequent waves. The findings of this study suggest that prompt interventions were shown to be highly effective at reducing peak demand for intensive care unit (ICU) beds but also prolong the epidemic, in some cases resulting in more deaths long term. This happens because covid-19 related mortality is highly skewed towards older age groups. In the absence of an effective vaccination programme, none of the proposed mitigation strategies in the UK would reduce the predicted total number of deaths below 200 000.
Take away: This model excludes the possibility of vaccination. As many vaccines are in stage three clinical trials, the conclusion that more people will die from closing schools, etc. will most likely not be realized.
The claim: School closures and isolation of younger people will increase total number of deaths from second and subsequent waves of COVID-19 when restrictions are lifted.
The evidence: This model predicts more deaths from the combination of place closures such as schools, case isolations, household quarantine, and social distancing of over 70s than for the combination of case isolation, household quarantine, and social distancing for over 70s. The majority of the deaths for the combination of place closures, case isolations, household quarantine, and social distancing of over 70s occur once the restrictions are lifted. This model excludes the possibility of a vaccine reducing the size of the second wave.
At least ten companies have a COVID-19 vaccine in the final stage (Phase III) of clinical trials (1). Therefore a model which excludes vaccination will most likely not be accurate to reality once a vaccine is widely administered.
Source:
1 https://www.who.int/publications/m/item/draft-landscape-of-covid-19-candidate-vaccines
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www.scientificamerican.com www.scientificamerican.com
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Stix, Y. Z., Gary. (n.d.). COVID-19 Is Now the Third Leading Cause of Death in the U.S. Scientific American. Retrieved October 9, 2020, from https://www.scientificamerican.com/article/covid-19-is-now-the-third-leading-cause-of-death-in-the-u-s1/
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www.politico.com www.politico.com
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CDC reverses course on testing for asymptomatic people who had Covid-19 contact
Take Away
Transmission of viable SARS-CoV-2 RNA can occur even from an infected but asymptomatic individual. Some people never become symptomatic. That group usually becomes non-infectious after 14 days from initial infection. For persons displaying symptoms , the SARS-CoV-2 RNA can be detected for 1 to 2 days prior to symptomatology. (1)
The Claim
Asymptomatic people who had SARS-CoV-2 contact should be tested.
The Evidence
Yes, this is a reversal of August 2020 advice. What is the importance of asymptomatic testing?
Studies show that asymptomatic individuals have infected others prior to displaying symptoms. (1)
According to the CDC’s September 10th 2020 update approximately 40% of infected Americans are asymptomatic at time of testing. Those persons are still contagious and are estimated to have already transmitted the virus to some of their close contacts. (2)
In a report appearing in the July 2020 Journal of Medical Virology, 15.6% of SARS-CoV-2 positive patients in China are asymptomatic at time of testing. (3)
Asymptomatic infection also varies by age group as older persons often have more comorbidities causing them to be susceptible to displaying symptoms earlier. A larger percentage of children remain asymptomatic but are still able to transmit the virus to their contacts. (1) (3)
Transmission modes
Droplet transmission is the primary proven mode of transmission of the SARS-CoV-2 virus, although it is believed that touching a contaminated surface then touching mucous membranes, for example, the mouth and nose can also serve to transmit the virus. (1)
It is still unclear how big or small a dose of exposure to viable viral particles is needed for transmission; more research is needed to elucidate this. (1)
Citations
(1) https://www.who.int/news- room/commentaries/detail/transmission-of-sars-cov-2- implications-for-infection-prevention-precautions
(2) https://www.cdc.gov/coronavirus/2019- ncov/hcp/planning-scenarios.html
(3) He J, Guo Y, Mao R, Zhang J. Proportion of asymptomatic coronavirus disease 2019: A systematic review and metaanalysis. J Med Virol. 2020;1– 11.https://doi.org/10.1002/jmv.26326
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www.cambridge.org www.cambridge.org
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In testimony before US Congress on March 11, 2020, members of the House Oversight and Reform Committee were informed that estimated mortality for the novel coronavirus was 10-times higher than for seasonal influenza. Additional evidence, however, suggests the validity of this estimation could benefit from vetting for biases and miscalculations. The main objective of this article is to critically appraise the coronavirus mortality estimation presented to Congress. Informational texts from the World Health Organization and the Centers for Disease Control and Prevention are compared with coronavirus mortality calculations in Congressional testimony. Results of this critical appraisal reveal information bias and selection bias in coronavirus mortality overestimation, most likely caused by misclassifying an influenza infection fatality rate as a case fatality rate.
Take away: COVID-19 death rate is worse than seasonal influenza death rate.
The claim: Coronavirus mortality was over estimated as 10X worse than seasonal influenza to congress due to misclassifying influenza infection fatality rate as a case fatality rate.
The evidence: Comparing infection fatality ratio (IFR) and case fatality ratio (CFR) is an apples to oranges comparison (1). Case fatality ratios present higher death percentages than infection fatality ratios. At the same time, it is important to understand that COVID-19 and seasonal influenza CFR and IFR numbers are rough approximations of reality and the potential for errors exist in all calculations.
The seasonal IFR rate of influenza was overstated in this article. The claim that seasonal influenza IFR and COVID-19 IFR are the same is based on seasonal influenza IFR of 0.1%. Per the WHO report, seasonal influenza “is usually well below 0.1%” (2). This statement was translated into “0.1% or lower” and then “the WHO also reported that 0.1% is the IFR of seasonal influenza, not the CFR of seasonal influenza as reported in the NEJM editorial” (3).
The article is questioning whether COVID-19 is worse than seasonal influenza due to confusion with IFR and CFR. The article overstated influenza IFR to arrive at the conclusion that COVID-19 and seasonal influenza death rates are the same.
Comparison of influenza and COVID-19 deaths:
Influenza CFR = 0.1-0.2%
(Based on CDC data # deaths / # symptomatic cases, 4).
COVID-19 CFR = 2.8%
(In the USA as of 10/6/2020. Includes asymptomatic cases and may therefore be an underestimate of true CFR, 5-6)
It is also important to note that COVID-19 disease is ongoing with the potential for some of the 7,461,206 cases to die from COVID-19 later. Only 2,935,142 cases in the US are reported as recovered as of 10/6/2020.
Even with the inclusion of asymptomatic cases in the death rate calculation for COVID-19, deaths/cases is at least 10X higher than the deaths/cases calculation of symptomatic influenza based on CDC data.
Sources:
1 https://pubmed.ncbi.nlm.nih.gov/32234121/
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Annotators
URL
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twitter.com twitter.com
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Luke O’Neill on Twitter. (n.d.). Twitter. Retrieved October 7, 2020, from https://twitter.com/laoneill111/status/1313542640391139329
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www.nytimes.com www.nytimes.com
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Mueller, B. (2020, October 7). ‘It Really Was Abandonment’: Virus Crisis Grips British Universities. The New York Times. https://www.nytimes.com/2020/10/06/world/europe/virus-UK-universities.html
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For every one confirmed case, Redfield said, the CDC estimates that 10 more people have been infected.
Take away: While this estimate may be the most accurate at the time there are several reasons (addressed below) why any estimate provided at this time may be imprecise. As more data is accrued, including information on the immunological dynamics of the SARS-CoV2 antibodies, we should expect to see a more accurate estimate.
The claim: For every one confirmed case the CDC estimates that another 10 more people have been infected.
The evidence: This estimate was revealed in a press briefing with CDC Director Robert Redfield on June, 25, 2020. It is important to emphasize that this is an estimate extrapolated from the collective data of numerous seroprevalence surveys (antibody tests) performed in different locations across the U.S. While it is most definitely true that the reported case numbers are lower than the actual, given the prevalence of asymptomatic individuals that do not visit medical centers to be tested, the actual figure may be lower or higher than the estimate presented here due to a variety of factors including:
1) Areas surveyed: Indeed, it is known that the number of cases vary disproportionately across different areas of the U.S. According to the CDC, three types of seroprevalence surveys are commonly performed: large-scale geographic, community-level, and special populations. It is important to note that each survey may or may not be completely representative of the specific area yet alone the U.S. as a whole.
2)Type of antibody testing: The FDA reported on the performance of numerous EUA authorized serology tests. The conclusion is that each test has varying levels of accuracy and confidence intervals. As the estimate provided by Redfield was most likely obtained from data derived from the specific test used at each individual surveillance site, the figure may be further skewed by the accuracy of each test.
3)Origin of blood samples: The type of individuals from which the blood samples tested originated may have a significant effect on the Redfield’s estimate. For example, if certain surveillance sites are exclusively testing samples from sick patients, the estimate may be an overestimate as a population presenting COVID symptoms is more likely to test positive than a healthy-looking population. Therefore, a detailed characterization of the individuals from which the blood was obtained would be needed in order to uphold accuracy.
4)Time of tests: As the advent of antibodies can occur a week or longer post-infection, individuals who have recently been infected may not have detectable levels of antibodies and may come up as false negatives. It is also possible for an individual to simply not produce enough antibodies to be detectable by a given serology test. Furthermore, a recent paper published in medrxiv suggests that certain antibodies have reduced titers within 50 days of symptom onset.
Take away: While this estimate may be the most accurate at the time there are several reasons (addressed below) why any estimate provided at this time may be imprecise. As more data is accrued, including information on the immunological dynamics of the SARS-CoV2 antibodies, we should expect to see a more accurate estimate.
The claim: For every one confirmed case the CDC estimates that another 10 more people have been infected.
The evidence: This estimate was revealed in a press briefing with CDC Director Robert Redfield on June, 25, 2020. It is important to emphasize that this is an estimate extrapolated from the collective data of numerous seroprevalence surveys (antibody tests) performed in different locations across the U.S. While it is most definitely true that the reported case numbers are lower than the actual, given the prevalence of asymptomatic individuals that do not visit medical centers to be tested, the actual figure may be lower or higher than the estimate presented here due to a variety of factors including:
1) Areas surveyed: Indeed, it is known that the number of cases vary disproportionately across different areas of the U.S. According to the CDC, three types of seroprevalence surveys are commonly performed: large-scale geographic, community-level, and special populations (1). It is important to note that each survey may or may not be completely representative of the specific area yet alone the U.S. as a whole.
2)Type of antibody testing: The FDA reported on the performance of numerous EUA authorized serology tests (2). The conclusion is that each test has varying levels of accuracy and confidence intervals. As the estimate provided by Redfield was most likely obtained from data derived from the specific test used at each individual surveillance site, the figure may be further skewed by the accuracy of each test.
3)Origin of blood samples: The type of individuals from which the blood samples tested originated may have a significant effect on the Redfield’s estimate. For example, if certain surveillance sites are exclusively testing samples from sick patients, the estimate may be an overestimate as a population presenting COVID symptoms is more likely to test positive than a healthy-looking population. Therefore, a detailed characterization of the individuals from which the blood was obtained would be needed in order to uphold accuracy.
4)Time of tests: As the advent of antibodies can occur a week or longer post-infection, individuals who have recently been infected may not have detectable levels of antibodies and may come up as false negatives. It is also possible for an individual to simply not produce enough antibodies to be detectable by a given serology test. Furthermore, a recent paper published in medrxiv suggests that certain antibodies have reduced titers within 50 days of symptom onset (3).
To conclude, while this estimate may be the most accurate at the time given the available data, many factors can affect the figure and, in some instances, more information is needed as it is unclear exactly how this number was obtained from the information provided in the press briefing.
Sources: 1) https://www.cdc.gov/coronavirus/2019-ncov/cases-updates/about-serology-surveillance.html
3) https://www.medrxiv.org/content/10.1101/2020.07.09.20148429v1
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www.americanthinker.com www.americanthinker.com
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The CDC summarized it succinctly, “For 6% of the deaths, COVID-19 was the only cause mentioned.
The takeaway: >50% of the adult US population has at least one chronic condition. Therefore exclusion of deaths from people with comorbidity will not predict how COVID-19 affects >50% of the adult US population.
The claim: Only 6% of deaths were caused by COVID-19 alone.
The evidence: The CDC website does state that "For 6% of the deaths, COVID-19 was the only cause mentioned." (1) The same web page also states "Data during the period are incomplete because of the lag in time between when the death occurred and when the death certificate is completed, submitted to NCHS and processed for reporting purposes. This delay can range from 1 week to 8 weeks or more."
Additionally, in the USA 6 out of 10 adults have one chronic disease and 4 out of 10 adults have two or more chronic conditions (2). Based on this data, COVID-19 deaths in people with chronic conditions should not be excluded because >50% of the adult population has at least one chronic condition.
Sources:
2 https://www.cdc.gov/chronicdisease/resources/infographic/chronic-diseases.htm
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www.biorxiv.org www.biorxiv.org
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Transparent Peer Review
Download the complete Review Process [PDF] including:
- reviews
- authors' reply
- editorial decisions
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twitter.com twitter.com
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Fionna O’Leary, 🕯 on Twitter. (n.d.). Twitter. Retrieved October 6, 2020, from https://twitter.com/fascinatorfun/status/1312855480956575744
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Adam Kucharski on Twitter. (n.d.). Twitter. Retrieved October 5, 2020, from https://twitter.com/AdamJKucharski/status/1312749950028189697
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Peek, K. (n.d.). Flu Season Never Came to the Southern Hemisphere. Scientific American. Retrieved October 5, 2020, from https://www.scientificamerican.com/article/flu-season-never-came-to-the-southern-hemisphere/
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Not so novel coronavirus?
Take away: More research is needed before the conclusion can be reached that T-cells from common cold coronaviruses are protective against SARS-CoV-2.
The claim: A significant part of the population may be immune to SARS-CoV-2 due to cross-reactivity to T-cells from HCo infections (“common cold viruses”).
The evidence: T- cell cross reactivity between common cold coronaviruses and SARS-CoV-2 occurred in 20-50% of people not exposed to SARS-CoV-2 (1-4). This cross-reactivity from T-cells led to the speculative hypothesis that cross-reactivity explains why children and young adults are not affected as badly as older adults (1). Additional research is needed to conclude that the presence of cross-reactive T-cells leads to less severe COVID-19 disease and does not result in the cytokine storm which is harmful instead of helpful in recovery from COVID-19 (2, 4). Significant cross-reactivity between SARS-CoV-2 and HCo antibodies was not observed with 1064 serum samples when tested with ELISA (5). A small study found some cross-reactivity between SARS-CoV-2 and HCo using rapid immunochromatographic antibody test which tests the ability of antibodies to react with SARS-CoV-2 (6).
The immune system uses multiple components to rid the body of an infection. Innate immunity includes inflammation, fever, and cells which non-specifically destroy infectious/toxic particles (7). The adaptive immune system includes cells which adapt to the specific pathogen it is attacking (8). The adaptive immune system includes B cells and T cells. B cells produce antibodies. Antibodies bind and neutralize toxins/infectious particles. T cells kill infected human cells which present antigens, infectious particle identifiers, which specific T cells recognize. A summary of the immune system's interaction with SARS-CoV-2 is written (9). Additional discussion can be found (10, 11).
In conclusion, T-cell cross reactivity was shown to occur (1-4). More research is needed to conclusively determine whether the presence of HCo cross-reactive T-cells leads to prevention or less severe infection by SARS-CoV-2.
Sources:
1 https://www.nature.com/articles/s41577-020-0389-z
3 https://pubmed.ncbi.nlm.nih.gov/32766111/
4 https://www.nature.com/articles/s41586-020-2550-z
5 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7417941/
6 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7381928/
7 https://www.ncbi.nlm.nih.gov/books/NBK26846/
8 https://www.ncbi.nlm.nih.gov/books/NBK21070/
11 https://twitter.com/EricTopol/status/1278400526716211200?s=20
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www.pscp.tv www.pscp.tv
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Inc, T. (n.d.). Independent SAGE @IndependentSage. Periscope. Retrieved October 2, 2020, from https://www.pscp.tv/IndependentSage/1PlKQNNlVDyGE
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2019nCOV. (n.d.). MOBS Lab. Retrieved October 2, 2020, from https://www.mobs-lab.org/2019ncov.html
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Nick Brown on Twitter. (n.d.). Twitter. Retrieved October 1, 2020, from https://twitter.com/sTeamTraen/status/1311282470084644865
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www.globalresearch.ca www.globalresearch.ca
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Dr. Anthony Fauci is lying to himself. In his public statements he says that Covid is “Ten Times Worse than Seasonal Flu”.
Take away: COVID-19 has a higher case fatality rate than seasonal flu but a lower case fatality rate than SARS and MERS.
The claim: Dr. Anthony Fauci is lying when he states COVID-19 is ten times worse than the seasonal flu.
The evidence: From 2010 to 2018, 0.1-0.2% of seasonal flu cases resulted in death (1). To date, the number of coronavirus deaths in the United States is 206,615 deaths per 7,216,828 cases (2, accessed 9/30/2020) which is a death rate of 2.9%. Therefore, the death rate of coronavirus is higher than the death rate of the seasonal flu. Similarities and differences between COVID-19 and seasonal flu are explained by John Hopkins Medicine and CDC (3-4).
COVID-19 is related to SARS, MERS, and "common cold" coronaviruses. The fatality rate of SARS (9.5%) and MERS (34.4%) is higher than COVID-19 (2.3%) (5).
Sources:
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www.pnas.org www.pnas.org
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Karatayev, Vadim A., Madhur Anand, and Chris T. Bauch. ‘Local Lockdowns Outperform Global Lockdown on the Far Side of the COVID-19 Epidemic Curve’. Proceedings of the National Academy of Sciences 117, no. 39 (29 September 2020): 24575–80. https://doi.org/10.1073/pnas.2014385117.
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Haseltine, W. A. (n.d.). Lessons from AIDS for the COVID-19 Pandemic. Scientific American. https://doi.org/10.1038/scientificamerican1020-35
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Chen, Q., & Porter, M. A. (2020). Epidemic Thresholds of Infectious Diseases on Tie-Decay Networks. ArXiv:2009.12932 [Physics]. http://arxiv.org/abs/2009.12932
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Humphries, R., Mulchrone, K., Tratalos, J., More, S., & Hövel, P. (2020). A Systematic Framework of Modelling Epidemics on Temporal Networks. ArXiv:2009.11965 [Nlin, Physics:Physics]. http://arxiv.org/abs/2009.11965
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Caniglia, E.C., Murray, E.J. (2020) Difference-in-Difference in the Time of Cholera: a Gentle Introduction for Epidemiologists. Current Epidemiology Reports. https://doi.org/10.1007/s40471-020-00245-2
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Cookson, C. (2020, March 24). Coronavirus may have infected half of UK population—Oxford study. https://www.ft.com/content/5ff6469a-6dd8-11ea-89df-41bea055720b
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Times info@bylinetimes.com (https://bylinetimes.com/), B. (2020, September 23). Scamademics? Right-Wing Lobbying Groups Reviving ‘Herd Immunity’ in the UK. Byline Times. https://bylinetimes.com/2020/09/23/scamademics-right-wing-lobbying-groups-reviving-herd-immunity-in-the-uk/
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A Brazilian city devastated by COVID-19 may have reached herd immunity. (2020, September 24). Science News. https://www.sciencenews.org/article/coronavirus-covid-19-brazil-city-manaus-herd-immunity
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Jones, D., & Helmreich, S. (2020). A history of herd immunity. The Lancet, 396(10254), 810–811. https://doi.org/10.1016/S0140-6736(20)31924-3
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